ANU Radiocarbon Dating Laboratory, General Projects

The laboratory is playing an important role in a number of research projects. Indeed, there is a continuing and increasing need for laboratory generated research involving improvements in dating techniques, analysis, interpretation and reporting of results; parameters fundamental to the validity of dating such as environmental contamination and selection of applicable dating standards. Equally important is participation on a cooperative basis in research generated by other departments and institutions, often involving field work

Low-level liquid scintillation spectrometer for ß-counting

A new liquid scintillation (LS) spectrometer has been developed. lt improves the signal to noise ratio of C-14 assays by an order of magnitude compared to conventional LS systems. As a result, precision for a modern sample is 0.2 % and the dating limit is 64 Ky BP for a 15 ml sample of benzene. Sophisticated MCA facilities allow the use of Multiparameter Multichannel Analysis for data validation and age evaluation. Despite the high sophistication, the spectrometer, (named QUANTULUS) is seif contained, microprocessor controlled and user friendly. lt can be used with full advantage in a normal laboratory environment

Polymer reptation and nucleosome repositioning

We consider how beads can diffuse along a chain that wraps them, without becoming displaced from the chain; our proposed mechanism is analogous to the reptation of "stored length" in more familiar situations of polymer dynamics. The problem arises in the case of globular aggregates of proteins (histones) that are wound by DNA in the chromosomes of plants and animals; these beads (nucleosomes) are multiply wrapped and yet are able to reposition themselves over long distances, while remaining bound by the DNA chain.Comment: 9 pages, including 2 figures, to be published in Phys. Rev. Let

Validation of multi-body models for simulation in authorisation of rail vehicles

An application of multi-body simulations is to reduce the amount of vehicle on-track testing and present an opportunity for saving the time and costs of vehicle acceptance in regard to running characteristics. One of the objectives of the EU project DynoTRAIN was to define criteria and limits for vehicle model validation. The paper presents investigations carried out by comparing simulations with measurements from a testing campaign using a test train with 4 types of vehicles and a total of 10 force measuring wheelsets and accompanied with continuous measurement of track irregularities and rail profiles. The simulations were performed by using several vehicle models, built in different simulation tools by different partners. The results of the investigations and the criteria and limits proposed for the validation of multi-body vehicle models, intended for simulations of on-track tests, in the framework of railway vehicle authorisations are presented.Une application des simulations multi-corps consiste à réduire la quantité d'essais en ligne et à offrir une opportunité pour économiser le temps et les coûts d'acceptation des Îhicules en ce qui concerne les caractéristiques de fonctionnement dynamiques. L'un des objectifs du projet de l'UE DynoTRAIN était de définir des critères et des limites pour la validation du modèle de Îhicule. Le document présente des recherches effectuées en comparant des simulations avec des mesures à partir d'une campagne de test utilisant un train d'essai avec 4 types de Îhicules et un total de 10 essieux de mesure de force roue-rail et accompagnés d'une mesure continue des irrégularités de voie et des profils de rail. Les simulations ont été réalisées en utilisant plusieurs modèles de Îhicules, construits dans différents outils de simulation par différents partenaires. Les résultats des enquêtes et les critères et limites proposés pour la validation des modèles de Îhicules multi-corps, destinés à des simulations de tests sur voie réelle, dans le cadre des autorisations de Îhicules ferroviaires sont présentés

Sequence Effects on DNA Entropic Elasticity

DNA stretching experiments are usually interpreted using the worm-like chain model; the persistence length A appearing in the model is then interpreted as the elastic stiffness of the double helix. In fact the persistence length obtained by this method is a combination of bend stiffness and intrinsic bend effects reflecting sequence information, just as at zero stretching force. This observation resolves the discrepancy between the value of A measured in these experiments and the larger ``dynamic persistence length'' measured by other means. On the other hand, the twist persistence length deduced from torsionally-constrained stretching experiments suffers no such correction. Our calculation is very simple and analytic; it applies to DNA and other polymers with weak intrinsic disorder.Comment: LaTeX; postscript available at http://dept.physics.upenn.edu/~nelson/index.shtm

Dynamics of railway freight vehicles

This paper summarises the historical development of railway freight vehicles and how vehicle designers have tackled the difficult challenges of producing running gear which can accommodate the very high tare to laden mass of typical freight wagons whilst maintaining stable running at the maximum required speed and good curving performance. The most common current freight bogies are described in detail and recent improvements in techniques used to simulate the dynamic behaviour of railway vehicles are summarised and examples of how these have been used to improve freight vehicle dynamic behaviour are included. A number of recent developments and innovative components and sub systems are outlined and finally two new developments are presented in more detail: the LEILA bogie and the SUSTRAIL bogie

Prospect Theory in the Heterogeneous Agent Model

Using the Heterogeneous Agent Model framework, we incorporate an extension based on Prospect Theory into a popular agent-based asset pricing model. The extension covers the phenomenon of loss aversion manifested in risk aversion and asymmetric treatment of gains and losses. Using Monte Carlo methods, we investigate behavior and statistical properties of the extended model and assess its relevance with respect to financial data and stylized facts. We show that the Prospect Theory extension keeps the essential underlying mechanics of the model intact, however, that it changes the model dynamics considerably. Stability of the model increases but the occurrence of the fundamental strategy is more extreme. Moreover, the extension shifts the model closer to the behavior of real-world stock markets

Occlusion of Regulatory Sequences by Promoter Nucleosomes In Vivo

Nucleosomes are believed to inhibit DNA binding by transcription factors. Theoretical attempts to understand the significance of nucleosomes in gene expression and regulation are based upon this assumption. However, nucleosomal inhibition of transcription factor binding to DNA is not complete. Rather, access to nucleosomal DNA depends on a number of factors, including the stereochemistry of transcription factor-DNA interaction, the in vivo kinetics of thermal fluctuations in nucleosome structure, and the intracellular concentration of the transcription factor. In vitro binding studies must therefore be complemented with in vivo measurements. The inducible PHO5 promoter of yeast has played a prominent role in this discussion. It bears two binding sites for the transcriptional activator Pho4, which at the repressed promoter are positioned within a nucleosome and in the linker region between two nucleosomes, respectively. Earlier studies suggested that the nucleosomal binding site is inaccessible to Pho4 binding in the absence of chromatin remodeling. However, this notion has been challenged by several recent reports. We therefore have reanalyzed transcription factor binding to the PHO5 promoter in vivo, using ‘chromatin endogenous cleavage’ (ChEC). Our results unambiguously demonstrate that nucleosomes effectively interfere with the binding of Pho4 and other critical transcription factors to regulatory sequences of the PHO5 promoter. Our data furthermore suggest that Pho4 recruits the TATA box binding protein to the PHO5 promoter

Activation-induced disruption of nucleosome position clusters on the coding regions of Gcn4-dependent genes extends into neighbouring genes

We have used paired-end sequencing of yeast nucleosomal DNA to obtain accurate genomic maps of nucleosome positions and occupancies in control cells and cells treated with 3-aminotriazole (3AT), an inducer of the transcriptional activator Gcn4. In control cells, 3AT-inducible genes exhibit a series of distinct nucleosome occupancy peaks. However, the underlying position data reveal that each nucleosome peak actually consists of a cluster of mutually exclusive overlapping positions, usually including a dominant position. Thus, each nucleosome occupies one of several possible positions and consequently, different cells have distinct local chromatin structures. Induction results in a major disruption of nucleosome positioning, sometimes with altered spacing and a dramatic loss of occupancy over the entire gene, often extending into a neighbouring gene. Nucleosome-depleted regions are generally unaffected. Genes repressed by 3AT show the same changes, but in reverse. We propose that yeast genes exist in one of several alternative nucleosomal arrays, which are disrupted by activation. We conclude that activation results in gene-wide chromatin remodelling and that this remodelling can even extend into the chromatin of flanking genes