Evaluating socio-economic and environmental sustainability of the sheep farming activity in Greece: a whole-farm mathematical programming approach

Ruminant livestock farming is an important agricultural activity, mainly located in less favoured areas. Furthermore, ruminants have been identi fi ed as a signi fi cant source of GHG emissions. In this study, a whole-farm optimization model is used to assess the socio-economic and environmental performance of the dairy sheep farming activity in Greece. The analysis is undertaken in two sheep farms that represent the extensive and the semi-intensive farming systems. Gross margin and labour are regarded as socio-economic indicators and GHG emissions as environmental indicators. The issue of the marginal abatement cost is also addressed. The results indicate that the semi-intensive system yields a higher gross margin/ewe (179 €) than the extensive system (117 €) and requires less labour. The extensive system causes higher emissions/kg of milk than the semi-intensive system (5.45 and 2.99 kg of CO2 equivalents, respectively). In both production systems, abatement is achieved primarily via reduction of the fl ock size and switch to cash crops. However, the marginal abatement cost is much higher in the case of the semi-intensive farms, due to their high productivity

Bacillus atrophaeus Outer Spore Coat Assembly and Ultrastructure

Our previous atomic force microscopy (AFM) studies successfully visualized native Bacillus atrophaeus spore coat ultrastructure and surface morphology. We have shown that the outer spore coat surface is formed by a crystalline array of {approx}11 nm thick rodlets, having a periodicity of {approx}8 nm. We present here further AFM ultrastructural investigations of air-dried and fully hydrated spore surface architecture. In the rodlet layer, planar and point defects, as well as domain boundaries, similar to those described for inorganic and macromolecular crystals, were identified. For several Bacillus species, rodlet structure assembly and architectural variation appear to be a consequence of species-specific nucleation and crystallization mechanisms that regulate the formation of the outer spore coat. We propose a unifying mechanism for nucleation and self-assembly of this crystalline layer on the outer spore coat surface

Pathways for avian influenza virus spread: GPS reveals wild waterfowl in commercial livestock facilities and connectivity with the natural wetland landscape

Zoonotic diseases are of considerable concern to the human population and viruses such as avian influenza (AIV) threaten food security, wildlife conservation and human health. Wild waterfowl and the natural wetlands they use are known AIV reservoirs, with birds capable of virus transmission to domestic poultry populations. While infection risk models have linked migration routes and AIV outbreaks, there is a limited understanding of wild waterfowl presence on commercial livestock facilities, and movement patterns linked to natural wetlands. We documented 11 wild waterfowl (three Anatidae species) in or near eight commercial livestock facilities in Washington and California with GPS telemetry data. Wild ducks used dairy and beef cattle feed lots and facility retention ponds during both day and night suggesting use for roosting and foraging. Two individuals (single locations) were observed inside poultry facility boundaries while using nearby wetlands. Ducks demonstrated high site fidelity, returning to the same areas of habitats (at livestock facilities and nearby wetlands), across months or years, showed strong connectivity with surrounding wetlands, and arrived from wetlands up to 1251 km away in the week prior. Telemetry data provides substantial advantages over observational data, allowing assessment of individual movement behaviour and wetland connectivity that has significant implications for outbreak management. Telemetry improves our understanding of risk factors for waterfowl–livestock virus transmission and helps identify factors associated with coincident space use at the wild waterfowl–domestic livestock interface. Our research suggests that even relatively small or isolated natural and artificial water or food sources in/near facilities increases the likelihood of attracting waterfowl, which has important consequences for managers attempting to minimize or prevent AIV outbreaks. Use and interpretation of telemetry data, especially in near-real-time, could provide key information for reducing virus transmission risk between waterfowl and livestock, improving protective barriers between wild and domestic species, and abating outbreaks

Assessment of the variation in nutritional composition and safety of dried recovered food from United States households and prospects for use in chicken feed

IntroductionNew poultry feed valorization pathways for recovered household food could be enabled by commercially available household devices that dry uneaten food material, arrest spoilage, and preserve nutrient content. However, the nutrient composition, safety, and feed incorporation potential of dried recovered household food (DRHF) is presently unknown.MethodsThirty-eight households spanning 31 states participated in a 4-to-6-week survey to generate and collect food residues that were dried using an in-home device. The DRHF samples were evaluated for chemical composition, digestibility of energy and amino acids, and safety to determine their potential for inclusion in chicken feed.Results and discussionThe DRHF had average levels of 15.9% crude protein, 13.3% crude fat, and 22.6% neutral detergent fiber, and 3.18 kcal/g of nitrogen-adjusted true metabolizable energy (by dry weight). The Windows User-Friendly Feed Formulation 2.1 modeler was used to perform linear programming and develop chicken feed rations for broilers and layers that incorporated DRHF alongside conventional feed ingredients, including corn, soybean meal, dicalcium phosphate, limestone, synthetic amino acids, salt, vitamin premix, and mineral premix. The feed formulation results showed that, on average, DRHF incorporation rates of up to 33 and 37% (by weight) are predicted to avoid any nutrient deficiencies or electrolyte imbalances in the broiler and layer rations, respectively. In the broiler ration, DRHF displaced corn, soybean meal, and limestone to varying degrees, while corn, soybean meal, animal fat, dicalcium phosphate, and limestone were substantially displaced in the layer rations. Addition of vitamin premix was predicted as necessary to facilitate DRHF inclusion in the layer rations. Furthermore, foodborne pathogens, mycotoxins, and heavy metals were either absent or below United States regulatory threshold levels. Measured levels of biogenic amines and fat/oil oxidation were consistent with prior research showing compatibility with chickens. These results can inform future in vivo feeding trials to validate the use of DRHF with varying properties in poultry feed

Following the Biochemical and Morphological Changes of Bacillus atrophaeus during Sporulation using Bioaerosol Mass Spectrometry

The overall objective of this report is to develop a real-time single-particle mass spectrometry technique called Bio-Aerosol Mass Spectrometry (BAMS) in order to efficiently screen and identify bioaerosols and single cells of national security and public health concern

Taking the Measure of the Universe: Precision Astrometry with SIM PlanetQuest

Precision astrometry at microarcsecond accuracy has application to a wide range of astrophysical problems. This paper is a study of the science questions that can be addressed using an instrument that delivers parallaxes at about 4 microarcsec on targets as faint as V = 20, differential accuracy of 0.6 microarcsec on bright targets, and with flexible scheduling. The science topics are drawn primarily from the Team Key Projects, selected in 2000, for the Space Interferometry Mission PlanetQuest (SIM PlanetQuest). We use the capabilities of this mission to illustrate the importance of the next level of astrometric precision in modern astrophysics. SIM PlanetQuest is currently in the detailed design phase, having completed all of the enabling technologies needed for the flight instrument in 2005. It will be the first space-based long baseline Michelson interferometer designed for precision astrometry. SIM will contribute strongly to many astronomical fields including stellar and galactic astrophysics, planetary systems around nearby stars, and the study of quasar and AGN nuclei. SIM will search for planets with masses as small as an Earth orbiting in the `habitable zone' around the nearest stars using differential astrometry, and could discover many dozen if Earth-like planets are common. It will be the most capable instrument for detecting planets around young stars, thereby providing insights into how planetary systems are born and how they evolve with time. SIM will observe significant numbers of very high- and low-mass stars, providing stellar masses to 1%, the accuracy needed to challenge physical models. Using precision proper motion measurements, SIM will probe the galactic mass distribution and the formation and evolution of the Galactic halo. (abridged)Comment: 54 pages, 28 figures, uses emulateapj. Submitted to PAS

Diagnostics in animal health: How UC helps exclude and minimize impact of livestock pathogens

UC has a wide reach in the agriculture sector of the California economy and is well recognized for research expertise in plant diseases. Less well known is the role UC plays in animal agriculture. In 2012, the California Animal Health and Food Safety lab at UC Davis performed nearly 980,000 tests on samples from sick livestock, including cattle, horses, pigs, chickens and turkeys. The lab is prepared to respond rapidly to any disease outbreak or identification of a foreign disease. Researchers at the School of Veterinary Medicine at UC Davis are testing novel subunit vaccines to prevent pinkeye in cattle; UC ANR specialists and advisors and the staff at the Sierra Foothill Research and Extension Center were key to the development of best management practices that landowners and resource managers are using to protect their herds and public water sources against the parasite Cryptosporidium parvum; and UC veterinary scientists are part of a large team of experts, including state and federal agencies, determined to combat the endemic bluetongue virus, which can affect the state's exports

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead