666 research outputs found

    STAT 216.00: Introduction to Statistics

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    Structural basis of TRAPPIII‐mediated Rab1 activation

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    The GTPase Rab1 is a master regulator of the early secretory pathway and is critical for autophagy. Rab1 activation is controlled by its guanine nucleotide exchange factor, the multisubunit TRAPPIII complex. Here, we report the 3.7 Å cryo‐EM structure of the Saccharomyces cerevisiae TRAPPIII complex bound to its substrate Rab1/Ypt1. The structure reveals the binding site for the Rab1/Ypt1 hypervariable domain, leading to a model for how the complex interacts with membranes during the activation reaction. We determined that stable membrane binding by the TRAPPIII complex is required for robust activation of Rab1/Ypt1 in vitro and in vivo, and is mediated by a conserved amphipathic α‐helix within the regulatory Trs85 subunit. Our results show that the Trs85 subunit serves as a membrane anchor, via its amphipathic helix, for the entire TRAPPIII complex. These findings provide a structural understanding of Rab activation on organelle and vesicle membranes

    Structural basis of TRAPPIII‐mediated Rab1 activation

    Get PDF
    The GTPase Rab1 is a master regulator of the early secretory pathway and is critical for autophagy. Rab1 activation is controlled by its guanine nucleotide exchange factor, the multisubunit TRAPPIII complex. Here, we report the 3.7 Å cryo‐EM structure of the Saccharomyces cerevisiae TRAPPIII complex bound to its substrate Rab1/Ypt1. The structure reveals the binding site for the Rab1/Ypt1 hypervariable domain, leading to a model for how the complex interacts with membranes during the activation reaction. We determined that stable membrane binding by the TRAPPIII complex is required for robust activation of Rab1/Ypt1 in vitro and in vivo, and is mediated by a conserved amphipathic α‐helix within the regulatory Trs85 subunit. Our results show that the Trs85 subunit serves as a membrane anchor, via its amphipathic helix, for the entire TRAPPIII complex. These findings provide a structural understanding of Rab activation on organelle and vesicle membranes

    Optical characterization of isothermal spin state switching in an Fe(II) spin crossover molecular and polymer ferroelectric bilayer

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    Using optical characterization, it is evident that the spin state of the spin crossover molecular complex [Fe{H2B(pz)2}2(bipy)] (pz = tris(pyrazol-1-1y)-borohydride, bipy = 2,2â€Č-bipyridine) depends on the electric polarization of the adjacent polymer ferroelectric polyvinylidene fluoride-hexafluoropropylene (PVDF-HFP) thin film. The role of the PVDF-HFP thin film is significant but complex. The UV–Vis spectroscopy measurements reveals that room temperature switching of the electronic structure of [Fe{H2B(pz)2}2(bipy)] molecules in bilayers of PVDF-HFP/[Fe{H2B(pz)2}2(bipy)] occurs as a function of ferroelectric polarization. The retention of voltage-controlled nonvolatile changes to the electronic structure in bilayers of PVDF-HFP/[Fe{H2B(pz)2}2(bipy)] strongly depends on the thickness of the PVDF-HFP layer. The PVDF-HFP/[Fe{H2B(pz)2}2(bipy)] interface may affect PVDF-HFP ferroelectric polarization retention in the thin film limit

    Relative commutants of strongly self-absorbing C*-algebras

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    The relative commutant Aâ€Č∩AUA'\cap A^{\mathcal{U}} of a strongly self-absorbing algebra AA is indistinguishable from its ultrapower AUA^{\mathcal{U}}. This applies both to the case when AA is the hyperfinite II1_1 factor and to the case when it is a strongly self-absorbing C*-algebra. In the latter case we prove analogous results for ℓ∞(A)/c0(A)\ell_\infty(A)/c_0(A) and reduced powers corresponding to other filters on N\bf N. Examples of algebras with approximately inner flip and approximately inner half-flip are provided, showing the optimality of our results. We also prove that strongly self-absorbing algebras are smoothly classifiable, unlike the algebras with approximately inner half-flip.Comment: Some minor correction

    Relativistic Effect on Low-Energy Nucleon-Deuteron Scattering

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    The relativistic effect on differential cross sections, nucleon-to-nucleon and nucleon-to-deuteron polarization transfer coefficients, and the spin correlation function, of nucleon-deuteron elastic scattering is investigated employing several three-dimensional relativistic three-body equations and several nucleon-nucleon potentials. The polarization transfer coefficients are found to be sensitive to the details of the nucleon-nucleon potentials and the relativistic dynamics employed, and prefer trinucleon models with the correct triton binding energy. (To appear in Phys. Rev. C)Comment: pages: 21, LaTex text + 7 ps-figures at the en
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