Urine peptidomic biomarkers for diagnosis of patients with systematic lupus erythematosus

Background: Systematic lupus erythematosus (SLE) is characterized with various complications which can cause serious organ damage in the human body. Despite the significant improvements in disease management of SLE patients, the non-invasive diagnosis is entirely missing. In this study, we used urinary peptidomic biomarkers for early diagnosis of disease onset to improve patient risk stratification, vital for effective drug treatment. Methods: Urine samples from patients with SLE, lupus nephritis (LN) and healthy controls (HCs) were analyzed using capillary electrophoresis coupled to mass spectrometry (CE-MS) for state-of-the-art biomarker discovery. Results: A biomarker panel made up of 65 urinary peptides was developed that accurately discriminated SLE without renal involvement from HC patients. The performance of the SLE-specific panel was validated in a multicentric independent cohort consisting of patients without SLE but with different renal disease and LN. This resulted in an area under the receiver operating characteristic (ROC) curve (AUC) of 0.80 (p < 0.0001, 95% confidence interval (CI) 0.65–0.90) corresponding to a sensitivity and a specificity of 83% and 73%, respectively. Based on the end terminal amino acid sequences of the biomarker peptides, an in silico methodology was used to identify the proteases that were up or down-regulated. This identified matrix metalloproteinases (MMPs) as being mainly responsible for the peptides fragmentation. Conclusions: A laboratory-based urine test was successfully established for early diagnosis of SLE patients. Our approach determined the activity of several proteases and provided novel molecular information that could potentially influence treatment efficacy

Calculation of vacancy wind contributions in ternary diffusion

In the absence of kinetic cross interactions between diffusing components, intrinsic diffusion can be described by a simple atomic mobility model. For systems where the diffusional interactions among components cannot be ignored, the interactions can be related to a vacancy wind effect in which the intrinsic flux of a component is influenced by the net vacancy flux. Atomic mobilities are calculated at selected composition points on the diffusion paths of y-phase U-Pu- Zr diffusion couples investigated at 750 {degrees}C to assess the contribution by the vacancy wind effect to the intrinsic diffusion of the individual components. The results point to the possibility that a large vacancy wind contribution may cause a component to diffuse intrinsically up its own chemical potential gradient

Tree biomass and soil carbon stocks in indigenous forests in comparison to plantations of exotic species in the Taita Hills of Kenya

Carbon (C) densities of the tree biomass and soil (0-50 cm) in indigenous forest and plantations of eucalyptus, cypress and pine in the Taita Hills, Kenya were determined and compared. The cypress and pine plantations were about 30-years-old and eucalyptus plantations about 50-years-old. Biomass C densities were estimated from breast height diameter and wood density using allometric functions developed for tropical species and an assumed C content of 50 %. Belowground biomass C densities were estimated using root:shoot biomass ratios. Soil organic C (SOC) densities were calculated from measured organic carbon contents (0-20 and 20-50 cm layers) and modelled bulk density values. Mean total biomass C and SOC densities for indigenous forest were greater than those of the plantations, and the difference was significant (p<0.05) in the cases of cypress and pine biomass and pine SOC. The correlation between biomass C and SOC densities was nearly significant in the case of indigenous forest, but negative. Biomass C densities were not significantly correlated with mean annual precipitation, mean annual temperature or potential evapotranspiration, but pine biomass C densities were significantly correlated to actual evapotranspiration. SOC densities were more strongly correlated to mean annual precipitation than biomass C densities, but only significantly so in the case of pine. Neither biomass C nor SOC densities were correlated to plant available water capacity of the soil. Indigenous forest SOC densities were significantly correlated to soil clay contents, but negatively. Indigenous forests sequester more C in biomass and soil than do 30 to 50-year-old plantations of exotics, but it remains unclear if this is an intrinsic difference between indigenous forest and plantations of exotics or because of insufficient time for SOC levels in plantations to recover after clearance of original indigenous forest.Peer reviewe

Deciphering The Preservation Of Fossil Insects: A Case Study From The Crato Member, Early Cretaceous Of Brazil

Exceptionally well-preserved three-dimensional insects with fine details and even labile tissues are ubiquitous in the Crato Member Konservat Lagerstätte (northeastern Brazil). Here we investigate the preservational pathways which yielded such specimens. We employed high resolution techniques (EDXRF, SR-SXS, SEM, EDS, micro Raman, and PIXE) to understand their fossilisation on mineralogical and geochemical grounds. Pseudomorphs of framboidal pyrite, the dominant fossil microfabric, display size variation when comparing cuticle with inner areas or soft tissues, which we interpret as the result of the balance between ion diffusion rates and nucleation rates of pyrite through the originally decaying carcasses. Furthermore, the mineral fabrics are associated with structures that can be the remains of extracellular polymeric substances (EPS). Geochemical data also point to a concentration of Fe, Zn, and Cu in the fossils in comparison to the embedding rock. Therefore, we consider that biofilms of sulphate reducing bacteria (SRB) had a central role in insect decay and mineralisation. Therefore, we shed light on exceptional preservation of fossils by pyritisation in a Cretaceous limestone lacustrine palaeoenvironment. © 2016 Osés et al.20161

Fast variability from black-hole binaries

Currently available information on fast variability of the X-ray emission from accreting collapsed objects constitutes a complex phenomenology which is difficult to interpret. We review the current observational standpoint for black-hole binaries and survey models that have been proposed to interpret it. Despite the complex structure of the accretion flow, key observational diagnostics have been identified which can provide direct access to the dynamics of matter motions in the close vicinity of black holes and thus to the some of fundamental properties of curved spacetimes, where strong-field general relativistic effects can be observed.Comment: 20 pages, 11 figures. Accepted for publication in Space Science Reviews. Also to appear in hard cover in the Space Sciences Series of ISSI "The Physics of Accretion onto Black Holes" (Springer Publisher

High-spin yrast structure of 159Ho

An investigation of the yrast structure of the odd-Z 159Ho nucleus to high spin has been performed. The 159Ho nucleus was populated by the reaction 116Cd(48Ca,p4nγ) at a beam energy of 215 MeV, and resulting γ decays were detected by the Gammasphere spectrometer. The h11/2 yrast band has been significantly extended up to Iπ=75/2- (tentatively 79/2-). A lower frequency limit for the second (h11/ 2)2 proton alignment was extracted consistent with the systematics of this alignment frequency, indicating an increased deformation with neutron number in the Ho isotopes. The energy-level splitting between the signature partners in the h11/2 structures of the Ho isotopes and the neighboring N=92 isotones is discussed

Structure changes in Er160 from low to ultrahigh spin

A spectroscopic investigation of the γ decays from excited states in Er160 has been performed in order to study the changing structural properties exhibited from low spin up toward ultrahigh spin (I~60). The nucleus Er160 was populated by the reaction Cd116(Ca48,4nγ) at a beam energy of 215 MeV, and resulting γ decays were studied using the Gammasphere spectrometer. New rotational structures and extensions to existing bands were observed, revealing a diverse range of quasiparticle configurations, which are discussed in terms of the cranked shell model. At spins around 50 there is evidence for oblate states close to the yrast line. Three rotational bands that have the characteristics of strongly deformed triaxial structures are observed, marking a return to collectivity at even higher spin. The high-spin data are interpreted within the framework of cranked Nilsson-Strutinsky calculations

Quasi-free neutron and proton knockout reactions from light nuclei in a wide neutron-to-proton asymmetry range

The quasi-free scattering reactions 11C(p,2p) and 10,11,12C(p,pn) have been studied in inverse kinematics at beam energies of 300–400 MeV/u at the R3B-LAND setup. The outgoing proton-proton and proton-neutron pairs were detected in coincidence with the reaction fragments in kinematically complete measurements. The efficiency to detect these pairs has been obtained from GEANT4 simulations which were tested using the 12C(p,2p) and 12C(p,pn) reactions. Experimental cross sections and momentum distributions have been obtained and compared to DWIA calculations based on eikonal theory. The new results reported here are combined with previously published cross sections for quasi-free scattering from oxygen and nitrogen isotopes and together they enable a systematic study of the reduction of single-particle strength compared to predictions of the shell model over a wide neutron-to-proton asymmetry range. The combined reduction factors show a weak or no dependence on isospin asymmetry, in contrast to the strong dependency reported in nucleon-removal reactions induced by nuclear targets at lower energies. However, the reduction factors for (p,2p) are found to be 'significantly smaller than for (p,pn) reactions for all investigated nuclei.German Federal Ministry of Education and Research | Ref. BMBF 05P2015RDFN1German Federal Ministry of Education and Research | Ref. 05P15WOFNAEuropean Commission | Ref. FP7, ENSAR, n. 262010Comisión Interministerial de Ciencia y Tecnología (CICYT) | Ref. FPA2012-32443Comisión Interministerial de Ciencia y Tecnología (CICYT) | Ref. FPA2015-64969-07387Comisión Interministerial de Ciencia y Tecnología (CICYT) | Ref. FPA2015-69640-C2-1-PSwedish Research Council | Ref. 621-2011-5324National Science Foundation, EE. UU. | Ref. n. 1415656Department of Energy, EE. UU. | Ref. n. DE-FG02-08ER41533Fundação para a Ciência e a Tecnologia | Ref. PTDC/FIS/ 103902/200

Quadrupole moments of collective structures up to spin ̃65h in 157Er and 158Er: A challenge for understanding triaxiality in nuclei

The transition quadrupole moments, Qt, of four weakly populated collective bands up to spin ̃65h in 157,158Er have been measured to be ̃11 eb demonstrating that these sequences are associated with large deformations. However, the data are inconsistent with calculated values from cranked Nilsson-Strutinsky calculations that predict the lowest energy triaxial shape to be associated with rotation about the short principal axis. The data appear to favor either a stable triaxial shape rotating about the intermediate axis or, alternatively, a triaxial shape with larger deformation rotating about the short axis. These new results challenge the present understanding of triaxiality in nuclei