Bags-of-Features for fish school cluster characterization in pelagic ecosystems : application to the discrimination of juvenile and adult anchovy (Engraulis ringens) clusters off Peru

Whereas fisheries acoustics data processing mainly focused on the detection, characterization, and recognition of individual fish schools, here we addressed the characterization and discrimination of fish school clusters. The proposed scheme relied on the application of the Bags-of-Features (BoF) approach to acoustic echograms. This approach is widely exploited for pattern recognition issues and naturally applies here, considering fish schools as the relevant elementary objects. It relies on the extraction and categorization of fish schools in fisheries acoustic data. Echogram descriptors were computed per unit echogram length as the numbers of schools in different school categories. We applied this approach to the discrimination of juvenile and adult anchovy (Engraulis ringens) off Peru. Whereas the discrimination of individual schools is low (below 70%), the proposed BoF scheme achieved between 89% and 92% of correct classification of juvenile and adult echograms for different survey data sets and significantly outperformed classical school-based echogram characteristics (about 10% of improvement of the correct classification rate). We further illustrate the potential of the proposed scheme for the estimation of the spatial distribution of juvenile and adult anchovy populations

Oxygen : a fundamental property regulating pelagic ecosystem structure in the coastal southeastern tropical pacific

Background: In the southeastern tropical Pacific anchovy (Engraulis ringens) and sardine (Sardinops sagax) abundance have recently fluctuated on multidecadal scales and food and temperature have been proposed as the key parameters explaining these changes. However, ecological and paleoecological studies, and the fact that anchovies and sardines are favored differently in other regions, raise questions about the role of temperature. Here we investigate the role of oxygen in structuring fish populations in the Peruvian upwelling ecosystem that has evolved over anoxic conditions and is one of the world's most productive ecosystems in terms of forage fish. This study is particularly relevant given that the distribution of oxygen in the ocean is changing with uncertain consequences. Methodology/Principal Findings: A comprehensive data set is used to show how oxygen concentration and oxycline depth affect the abundance and distribution of pelagic fish. We show that the effects of oxygen on anchovy and sardine are opposite. Anchovy flourishes under relatively low oxygen conditions while sardine avoid periods/areas with low oxygen concentration and restricted habitat. Oxygen consumption, trophic structure and habitat compression play a fundamental role in fish dynamics in this important ecosystem. Conclusions/Significance: For the ocean off Peru we suggest that a key process, the need to breathe, has been neglected previously. Inclusion of this missing piece allows the development of a comprehensive conceptual model of pelagic fish populations and change in an ocean ecosystem impacted by low oxygen. Should current trends in oxygen in the ocean continue similar effects may be evident in other coastal upwelling ecosystems