Verminotic pneumonia in South American fur seal (Arctocephalus australis) in Southern Brazil

Verminotic pneumonia caused by Parafilaroides spp. nematodes is an underreported disease in beached South American fur seals, with scant literature available on the characteristics of parafilaroidiasis, the nematode itself, as well as its occurrence in pinnipeds in Brazil. The present work aims to identify, describe and detail the histological features of the infection and molecular characteristics of verminotic pneumonia in the South American fur seal. Twenty-six specimens of Arctocephalus australis, found dead on the northern coast of Rio Grande do Sul in 2021, were analysed. These animals were identified and submitted to necropsy and histology. For the molecular identification of metastrongylids, lung fragments were subjected to DNA extraction, polymerase chain reaction targeting the Internal transcribed spacer 2 (ITS-2) gene and subsequent sequencing. In total, 12 animals presented with parasites in the lung parenchyma on histological evaluation, and only 1 showed a granulomatous lung lesion at necropsy. Microscopically, the nematodes were found mainly in the alveoli, associated with little or no inflammatory response, and they had morphological characteristics compatible with metastrongylids. Six ITS-2 gene quality sequences were obtained; after comparative analysis via BLAST, they showed similarity with sequences obtained from Parafilaroides sp. Therefore, verminotic pneumonia caused by Parafilaroides represents an important differential diagnosis of lung disease in South American fur seals found on the northern coast of Rio Grande do Sul

Primeiro registro de melanismo no criticamente ameaçado gato-pampeano (Leopardus munoai), uma espécie endêmica das áreas abertas do Pampa

We report the first record of a melanistic individual of the critically endangered Pampa cat (Leopardus munoai), from July 8th, 2021, at 10:45 am (coordinates 30.096288° S; 54.941139° W) in the area of the Brazilian army, known as Campo de Instrução Barão de São Borja (CIBSB), popularly known as Saicã.Este trabalho reporta o primeiro registro de melanismo do criticamente ameaçado de extinção gato-pampeano (Leopardus munoai), realizado em 8 de julho de 2021, às 10:45 da manhã. O registro foi obtido nas coordenadas 30.096288° S; 54.941139° W na área do exército brasileiro Campo de Instrução Barão de São Borja (CIBSB), popularmente conhecida como Saicã

Wild animals housed at the IBAMA triage center in Southern Brazil, 2005–2021: a glimpse into the endless conflicts between man and other animals

Spurred on by the illegal billion-dollar revenue, the capture and trade of wild fauna remain the leading illegal activities in Brazil, and elsewhere. We present and discuss insights into the wild animals housed at the Wild Animal Triage Center in Southern Brazil. Recorded data from 2005 to 2021 were used. A total of 36,950 animals were sheltered in that period, and most of them were common passerines (24,182) such as the Saffron Finch, and Red-crested Cardinal, among many others confiscated after inspections or reports. Passerines have long been the top trafficked species in Brazil and abroad, where birdkeeping has strong cultural and economic values. The totals per class were 29,784 birds (80.6%), 2,584 (7.0%) insects, 2,237 (6.1%) reptiles, and 2,170 (5.9%) mammals. Since they were mostly surrendered by the population rather than seized, most mammals, insects, and reptiles were probably unwanted guests in human spaces, tendency that illustrates the human difficulty in coexisting with wildlife. A total of 3,085 animals exhibited some threat or risk of extinction, which, as a general rule, grants them conservation priority. However, regardless of class, most animals (31,142) in this study were rated as least concern on the red lists, a trend in wildlife trafficking linked to the category criteria of being widely distributed species with abundant populations, and often, in close contact with human neighbors. Maintaining an abundance of common and nonthreatened species can be justified by the greater extent of their ecosystem services, from a local to global scale. Our results further highlight the urgent need to change our ways of interacting with wildlife, outstandingly the irresponsible ownership of animals

The Critically Endangered Pampa Cat (<em>Leopardus munoai</em>) on the Brink of Extinction in Brazil: The Little We Know and an Action Plan to Try to Save it

Leopardus munoai, the Pampa cat, is a small felid (ca. 3–4 kg) recently separated from the Leopardus colocola complex. This Pampa cat is endemic to the Pampas grasslands of Uruguay, western Argentina and southernmost Brazil. Originally, the Pampas had a long history of extensive cattle ranching; however, its fields have been exponentially converted mostly to soy fields in the last five decades. Species distribution models have shown a reduction in their area (1997–2022) of 42%, with only 31,808 km2 of suitable habitat remaining. Despite the Brazilian Pampas being surveyed in their entirety, no records of this felid have ever been repeated at the same site in different years since 1997 (50,000 trap-nights; >400,000 km of highway day/night crossing). This effort generated only 32 records (17 road-kills). Despite the huge detection efforts, there has never been a confirmed resident population detected anywhere. The scenario that unfolds is of an extremely rare felid that seems to use the vanishing native herbaceous fields, which are dependent upon cattle grazing, in replacement of the original (now extinct) grazing megafauna. With an expected population of 45–50 individuals, which has become virtually extinct in its original eastern portion, all signs point towards imminent extinction

A preliminary assessment of the potential health and genetic impacts of releasing confiscated passerines into the wild : a reduced-risk approach

The illegal capture and trade of wild birds have long been threats to biodiversity. The rehabilitation and release of confiscated animals may be a useful conservation tool in species management. However, differences between populations regarding health (e.g., different pathogens) and adaptation (e.g., local adaptation) must be taken into account, since both can negatively impact the recipient population. In this pilot study, we used two of the most illegally trafficked Brazilian wild passerine species, namely the red-crested cardinal (Paroaria coronata) and green-winged saltator (Saltator similis) as case studies and assessed some of the health threats that the release of confiscated passerines may pose to free-living birds. We also investigated the level of difference in mitochondrial genetic structure among populations living in different ecoregions. Blood, feces, and oropharyngeal swabs from confiscated (n = 115) and free-living (n = 120) passerines from the release sites were tested for the Newcastle disease virus, Salmonella spp., and Mycoplasma gallisepticum. These are considered major avian diseases by the Brazilian National Avian Health Program. We analyzed mtDNA to study the difference in genetic structure between populations using samples from 127 free-living passerines. We found no evidence of the Newcastle disease virus or Salmonella spp. in confiscated or free-living passerines from either species. However, the levels of infection with M. galissepticum detected in our study for red-crested cardinals and green-winged saltators calls for a high degree of caution in captive release programs. The difference in genetic structure between populations occurring in different regions was low, and was not significant between those from the Pampa/Subtropical Grasslands region. These results suggest that it may be possible to establish a cost-effective and sensitive protocol for releasing confiscated songbirds, provided that further genome-wide studies indicate that the functional genetic diversity among (at least some of the) populations is also low

Viral diversity in oral cavity from Sapajus nigritus by metagenomic analyses

Sapajus nigritus are non-human primates which are widespread in South America. They are omnivores and live in troops of up to 40 individuals. The oral cavity is one of the main entry routes for microorganisms, including viruses. Our study proposed the identification of viral sequences from oral swabs collected in a group of capuchin monkeys (n = 5) living in a public park in a fragment of Mata Atlantica in South Brazil. Samples were submitted to nucleic acid extraction and enrichment, which was followed by the construction of libraries. After high-throughput sequencing and contig assembly, we used a pipeline to identify 11 viral families, which are Herpesviridae, Parvoviridae, Papillomaviridae, Polyomaviridae, Caulimoviridae, Iridoviridae, Astroviridae, Poxviridae, and Baculoviridae, in addition to two complete viral genomes of Anelloviridae and Genomoviridae. Some of these viruses were closely related to known viruses, while other fragments are more distantly related, with 50% of identity or less to the currently available virus sequences in databases. In addition to host-related viruses, insect and small vertebrate-related viruses were also found, as well as plant-related viruses, bringing insights about their diet. In conclusion, this viral metagenomic analysis reveals, for the first time, the profile of viruses in the oral cavity of wild, free ranging capuchin monkeys

Fecal bacterial communities of wild black capuchin monkeys (Sapajus nigritus) from the Atlantic Forest biome in Southern Brazil are divergent from those of other non-human primates

Gut microbiota are influenced by factors such as diet, habitat, and social contact, which directly affect the host's health. Studies related to gut microbiota in non-human primates are increasing worldwide. However, little remains known about the gut bacterial composition in wild Brazilian monkeys. Therefore, we studied the fecal microbiota composition of wild black capuchin monkey (Sapajus nigritus) (n=10) populations from two different Atlantic Forest biome fragments (five individuals per fragment) in south Brazil. The bacterial community was identified via the high-throughput sequencing and partial amplification of the 16S rRNA gene (V4 region) using an Ion Personal Genome Machine (PGMTM) System. In contrast to other studies involving monkey microbiota, which have generally reported the phyla Firmicutes and Bacteroidetes as predominant, black capuchin monkeys showed a high relative abundance of Proteobacteria (X= 80.54%), followed by Firmicutes (X= 12.14%), Actinobacteria (X= 4.60%), and Bacteriodetes (X= 1.31%). This observed particularity may have been influenced by anthropogenic actions related to the wild habitat and/or diet specific to the Brazilian biome's characteristics and/or monkey foraging behavior. Comparisons of species richness (Chao1) and diversity indices (Simpson and InvSimpson) showed no significant differences between the two groups of monkeys. Interestingly, PICRUSt2 analysis revealed that metabolic pathways present in the bacterial communities were associated with xenobiotic biodegradation and the biosynthesis of secondary metabolites, which may suggest positive effects on monkey health and conservation in this anthropogenic habitat. Infectious disease-associated microorganisms were also observed in the samples. The present study provides information about the bacterial population and metabolic functions present in fecal microbiota, which may contribute to a better understanding of the ecology and biology of black capuchin monkeys living in forest fragments within the Atlantic Forest biome in southern Brazil. Additionally, the present study demonstrates that the fecal bacterial communities of wild black capuchin monkeys in this area are divergent from those of other wild non-human primates

Antimicrobial resistance profiles in Enterococcus spp. isolates from fecal samples of wild and captive black capuchin monkeys (Sapajus nigritus) in South Brazil

The environment, human, and animals play an important role in the spread of antibioticresistant bacteria. Enterococci are members of the gastrointestinal tracts of humans and animals and represent important reservoirs of antibiotic resistance genes. Until today, few studies have examined antibiotic susceptibility in enterococci isolated from primates. Therefore, the present study investigated species distribution, antibiotic susceptibility, and resistance genes in enterococci isolated from wild and captive black capuchins monkeys (Sapajus nigritus) in Rio Grande do Sul, South Brazil. A total of 24 swabs/fecal samples were collected, including 19 from wild monkeys living in two forest fragments [São Sebastião do Caí (SSC) and Santa Cruz do Sul (SCS)], and five in captive [Parque Zoológico da Fundação Zoobotânica (ZOO)], between August 2016 and November 2017. Fifteen colonies were randomly selected from each sample. Enterococci were identified by MALDI-TOF, tested for susceptibility to 12 antibiotics; and screened for tet(S), tet(M), tet(L), msrC, and erm(B) genes by PCR. Two-hundred ninety-six enterococci were isolated (SSC n = 137; SCS n = 86; ZOO n = 73) and differences in Enterococcus species distribution were detected on three monkey groups, with low abundance in SCS (1 D = 0.2), followed by ZOO (1 D = 0.68), and SSC (1 D = 0.73). The enterococci frequently recovered include the following: Enterococcus faecalis (42.6%), E. hirae (29.1%), and E. faecium (15.9%). Antibioticnonsusceptible was observed in 202 (67.9%) strains. The rate of non-susceptibility to rifampicin, tetracycline, erythromycin, nitrofurantoin, chloramphenicol, and ampicillin was 46%, 26%, 22% and 19%, 13%, 0.3%, and 0.3%, respectively. All strains were susceptible to vancomycin, streptomycin, gentamycin, and linezolid. Forty-three (14.52%) isolates were identified as multidrug resistant (MDR), and the highest number of MDR enterococci were E. faecium recovered from wild monkeys living close to a hospital and water treatment plant. Elevated rates of antibiotic resistance genes msrC and tet(L) were isolates from ZOO. In conclusion, differences in the frequency of enterococci species, antibiotic-nonsusceptible and antibiotic resistance genes in all groups of monkeys were identified. These data suggest that anthropogenic activities could have an impact in the resistome of primate gut enterococci communities

Salmonella spp. em Cebus spp. mantidos em Centros de Triagem de Animais Silvestres no Nordeste do Brasil

Objetivou-se com esse estudo isolar e identificar os sorovares de Salmonella spp. em Cebus spp. mantidos em cativeiro. Foram investigados 28 animais mantidos em Centros de Triagem de Animais Silvestres (CETAS) do Nordeste do Brasil. Foram realizados suabes retais que foram processados para o isolamento da bactéria em meios seletivos seguido da identificação dos sorovares por meio de provas bioquímicas. Das 28 amostras analisadas, cinco (17,9%) foram positivas para Salmonella spp. e os sorovares identificados foram Infantis (40%), Panama (40%) e Newport (20%). Ocorreu associação significativa (p<0.05) para as variáveis: instituição (p=0,026), armazenamento de frutas, verduras e hortaliças (p=0,026), fornecimento de carne crua (p=0,026), tipo de bebedouro (p=0,026) e higienização diária de bebedouros (p=0,026). Esse estudo demonstrou que infecções por Salmonella spp. ocorrem em populações de Cebus mantidos em cativeiro e apontou para a necessidade de se realizar investigações periódicas em todo o plantel, assim como implantar medidas de controle para evitar riscos à saúde dos animas e pública