33 research outputs found
Iterative submatrix diagonalisation for large configuration interaction problems
<p>The Davidson method has been highly successful for solving for eigenpairs of the large matrices that are common in quantum chemical simulations. Electronic structure simulations, however, can still easily generate matrices that are too large for current computational resources to handle. Therefore, many strategies have arisen to obtain eigenpairs of sufficient accuracy without considering the full Hamiltonian matrix. This article introduces one such strategy by creating a systematic series of submatrix approximations to the full matrix using natural orbitals. By solving for eigenpairs in this series, the eigenvalue accuracy can be gradually increased until a convergence threshold is reached. Importantly, this allows the series to terminate without ever reaching the full matrix, resulting in lower computational costs and reduced memory demands. Application of the method to the full configuration interaction problem for ground states, excited states and potential energy scans of various systems shows that the iterative submatrix diagonalisation method can systematically control eigenvalue errors and provide substantial cost-savings. This method is therefore expected to be highly useful for large-scale diagonalisation problems in electronic structure theory.</p
Unraveling the Crucial Role of Metal-Free Catalysis in Borazine and Polyborazylene Formation in Transition-Metal-Catalyzed AmmoniaāBorane Dehydrogenation
Though
the recent scientific literature is rife with experimental
and theoretical studies on transition-metal (TM)-catalyzed dehydrogenation
of ammoniaāborane (NH<sub>3</sub>Ā·BH<sub>3</sub>) due
to its relevance in chemical hydrogen storage, the mechanistic knowledge
is mostly restricted to the formation of aminoborane (NH<sub>2</sub>BH<sub>2</sub>) after 1 equiv of H<sub>2</sub> removal from NH<sub>3</sub>Ā·BH<sub>3</sub>. Unfortunately, the chemistry behind
the formation of borazine and polyborazylene, which happens only after
more than 1 equiv of H<sub>2</sub> is released from ammoniaāborane
in these TM-catalyzed homogeneous reactions, largely remains unknown.
In this work we use density functional theory to unravel the curious
function of āfree NH<sub>2</sub>BH<sub>2</sub>ā. Initially,
free NH<sub>2</sub>BH<sub>2</sub> molecules form oligomers such as
cyclotriborazane and <i>B</i>-(cyclodiborazanyl)Āaminoborohydride.
We show that, through a web of concerted proton and hydride transfer
based dehydrogenations of oligomeric intermediates, cycloaddition
reactions, and hydroboration steps facilitated by NH<sub>2</sub>BH<sub>2</sub>, the development of the polyborazylene framework occurs.
The rate-determining free energy barrier for the formation of a polyborazylene
template is predicted to be 25.7 kcal/mol at the M05-2XĀ(SMD)/6-31++GĀ(d,p)//M05-2X/6-31++GĀ(d,p)
level of theory. The dehydrogenation of BN oligomeric intermediates
by NH<sub>2</sub>BH<sub>2</sub> yields NH<sub>3</sub>Ā·BH<sub>3</sub>, suggesting for certain catalytic systems that the role of
the TM catalyst is limited to the dehydrogenation of NH<sub>3</sub>Ā·BH<sub>3</sub> to maintain optimal amounts of free NH<sub>2</sub>BH<sub>2</sub> in the reaction medium to enable polyborazylene formation.
TM catalysts that fail to produce borazine and polyborazylene falter
because they rapidly consume NH<sub>2</sub>BH<sub>2</sub> in TM-catalyzed
polyaminoborane formation, thus preventing the chain of events triggered
by NH<sub>2</sub>BH<sub>2</sub>
Examining the Ways To Bend and Break Reaction Pathways Using Mechanochemistry
Mechanical
forces can lead to qualitative changes in reaction mechanism,
which depend on the specific mode of force induction and inherent
chemistries of the mechanophore. To demonstrate these effects at an
atomistic level, three challenging mechanochemical transformations
of recent interest are herein studied: spiropyran ring opening, flex-activated
small molecule release, and cyclopropane ring opening. These examples
show that mechanical load can eliminate intermediates and transition
states along a reaction path, preactivate reactions where the force
is not parallel to the reaction path, and modulate force conveyance
to the mechanophore in a polymer-dependent fashion. Two different
merocyanin products were identifiedīøcis and trans isomersīøfrom
the spiropyran ring-opening reaction, and tuning the magnitude of
the force allows for selection of one over the other. The reaction
involving oxanorbornadiene where bonds perpendicular to the force
are flexed through angular distortions has the interesting property
that while the central bond contracts, the overall molecule is lengthened
to effect activation. Cyclopropane ring openings demonstrate that
the larger the extension of the mechanophore, determined by the rigidity
of the polymer backbone under applied force, the larger the change
in activation barrier. In this case, the application of a force represents
a preactivation mechanism where the initial structure rises in energy,
while the transition state stays relatively constant. For these three
motifs, the reaction paths are readily uncovered using the growing
string method, showing it to be a widely useful tool for studying
mechanochemistry
Achieving Accurate Reduction Potential Predictions for Anthraquinones in Water and Aprotic Solvents: Effects of Inter- and Intramolecular HāBonding and Ion Pairing
In
this combined computational and experimental study, specific
chemical interactions affecting the prediction of one-electron and
two-electron reduction potentials for anthraquinone derivatives are
investigated. For 19 redox reactions in acidic aqueous solution, where
AQ is reduced to hydroanthraquinone, density functional theory (DFT)
with the polarizable continuum model (PCM) gives a mean absolute deviation
(MAD) of 0.037 V for 16 species. DFTĀ(PCM), however, highly overestimates
three redox couples with a MAD of 0.194 V, which is almost 5 times
that of the remaining 16. These three molecules have ether groups
positioned for intramolecular hydrogen bonding that are not balanced
with the intermolecular H-bonding of the solvent. This imbalanced
description is corrected by quantum mechanics/molecular mechanics
(QM/MM) simulations, which include explicit water molecules. The best
theoretical estimations result in a good correlation with experiments, <i>V</i>(Theory) = 0.903<i>V</i>(Expt) + 0.007 with an <i>R</i><sup>2</sup> value of 0.835 and an MAD of 0.033 V. In addition
to the aqueous test set, 221 anthraquinone redox couples in aprotic
solvent were studied. Five anthraquinone derivatives spanning a range
of redox potentials were selected from this library, and their reduction
potentials were measured by cyclic voltammetry. DFTĀ(PCM) calculations
predict the first reduction potential with high accuracy giving the
linear relation, <i>V</i>(Theory) = 0.960<i>V</i>(Expt) ā 0.049 with an <i>R</i><sup>2</sup> value
of 0.937 and an MAD of 0.051 V. This approach, however, significantly
underestimates the second reduction potential, with an MAD of 0.329
V. It is shown herein that treatment of explicit ion-pair interactions
between the anthraquinone derivatives and the cation of the supporting
electrolyte is required for the accurate prediction of the second
reduction potential. After the correction, <i>V</i>(Theory)
= 1.045<i>V</i>(Expt) ā 0.088 with an <i>R</i><sup>2</sup> value 0.910 and an MAD value reduced by more than half
to 0.145 V. Finally, molecular design principles are discussed that
go beyond simple electron-donating and electron-withdrawing effects
to lead to predictable and controllable reduction potentials
Density Functional Physicality in Electronic Coupling Estimation: Benchmarks and Error Analysis
Electronic
coupling estimates from constrained density functional
theory configuration interaction (CDFT-CI) depend critically on choice
of density functional. In this Letter, the orbital multielectron self-interaction
error (OMSIE), vertical electron affinity (VEA), and vertical ionization
potential (VIP) are shown to be the key indicators inherited from
the density functional that determine the accuracy of electronic coupling
estimates. An error metric Ī· is derived to connect the three
properties, based on the linear proportionality between electronic
coupling and overlap integral, and the hypothesis that the slope of
this line is a function of VEA/VIP, Ī· = (1/<i>N</i><sub>testset</sub>)ĀĪ£<sub><i>i</i></sub><sup>testset</sup>|āVE<sup>Ref</sup> Ć OMSIE + ĪVE ā ĪVE Ć OMSIE|<sub><i>i</i></sub>. Based on Ī·, BH&HLYP and LRC-ĻPBEh
are suggested as the best functionals for electron and hole transfer,
respectively. Error metric Ī· is therefore a useful predictor
of errors in CDFT-CI electronic coupling, showing that the physical
correctness of the density functional has a direct effect on the accuracy
of the electronic coupling
Entrances, Traps, and Rate-Controlling Factors for Nickel-Catalyzed CāH Functionalization
A detailed
mechanistic investigation of N-heterocyclic carbene-nickel-catalyzed
hydroarylation via CāH functionalization is described. These
catalysts are complicated, in part, by undesired reactivity stemming
from common olefinic ligands such as cyclooctadiene (COD) that stabilize
the precatalyst. This reaction adds diversity to the overall reactive
landscape by permitting multiple types of ligand-to-ligand hydrogen
transfer (LLHT) steps to activate the substrate arene CāH bonds.
In one case, stable Ļ-allyl complexes can be formed via LLHT
to the olefin, hindering catalysis, and in the other, LLHT to the
alkyne substrate leads to productive catalysis. Here, a useful map
is built from extensive computational and experimental studies to
guide subsequent investigations on the productive use of Ni catalysis.
In addition to showing the details of catalyst deactivation, activation,
and operating regimes, this article suggests the following: 1. Reductive
elimination is rate-limiting and assisted by an additional alkyne
ligand; 2. The resting state for catalysis is an alkyne-ligated Ni
center; and 3. The reaction rate is under thermodynamic control, showing
a good correlation with thermodynamics of CāH addition to the
metal center (<i>R</i><sup>2</sup> = 0.95)
Dynamic Mechanisms for Ammonia Borane Thermolysis in Solvent: Deviation from Gas-Phase Minimum-Energy Pathways
The dynamic mechanisms involved in the dehydrogenation of ammonia borane are investigated using quasi-classical trajectory simulations. The effects of solvent and nuclear motion yield qualitatively different results compared to simulations where these considerations are neglected. Not only are rate-limiting barriers substantially different from the gas to solvent phase, trajectories leading from transition states branch to different products depending on the presence or lack of solvent. In addition, the formation of the diammoniate of diborane is shown to be noncompetitive in the gas phase due to the presence of a lower-barrier dehydrogenation pathway. The first comparative analysis of the pathways leading to the thermolysis of ammoniaāborane is presented herein
Highly Active Nickel Catalysts for CāH Functionalization Identified through Analysis of Off-Cycle Intermediates
An
inhibitory role of 1,5-cyclooctadiene (COD) in nickel-catalyzed
CāH functionalization processes was identified and studied.
The bound COD participates in CāH activation by capturing the
hydride, leading to a stable off-cycle Ļ-allyl complex that
greatly diminished overall catalytic efficiency. Computational studies
elucidated the origin of the effect and enabled identification of
a 1,5-hexadiene-derived pre-catalyst that avoids the off-cycle intermediate
and provides catalytic efficiencies that are superior to those of
catalysts derived from NiĀ(COD)<sub>2</sub>
Highly Active Nickel Catalysts for CāH Functionalization Identified through Analysis of Off-Cycle Intermediates
An
inhibitory role of 1,5-cyclooctadiene (COD) in nickel-catalyzed
CāH functionalization processes was identified and studied.
The bound COD participates in CāH activation by capturing the
hydride, leading to a stable off-cycle Ļ-allyl complex that
greatly diminished overall catalytic efficiency. Computational studies
elucidated the origin of the effect and enabled identification of
a 1,5-hexadiene-derived pre-catalyst that avoids the off-cycle intermediate
and provides catalytic efficiencies that are superior to those of
catalysts derived from NiĀ(COD)<sub>2</sub>
Virtual Screening of Hole Transport, Electron Transport, and Host Layers for Effective OLED Design
The alignment of
energy levels within an OLED device is paramount
for high efficiency performance. In this study, the emissive, electron
transport, and hole transport layers are consecutively evolved under
the constraint of fixed electrode potentials. This materials development
strategy takes into consideration the full multilayer OLED device,
rather than just individual components. In addition to introducing
this protocol, an evolutionary method, a genetic algorithm (GA), is
evaluated in detail to increase its efficiency in searching through
a library of 30 million organic compounds. On the basis of the optimization
of the variety of GA parameters and selection methods, an exponential
ranking selection protocol with a high mutation rate is found to be
the preferred method for quickly identifying the top-performing molecules
within the large chemical space. This search through OLED materials
space shows that the pyridine-based central core with acridine-based
fragments are good target host molecules for common electrode materials.
Additionally, weak electron-donating groups, such as naphthalene-
and xylene-based fragments, appear often in the optimal electron-transport
layer materials. Triphenylamine- and acridine-based fragments, due
to their strong electron-donating character, were found to be good
candidates for the hole-transport layer