An agent-based model of COVID-19 dynamics during enhanced community quarantine: Exploring the role of food relief system in the presence of two SARS-CoV-2 variants

Introduction: The onset of the SARS-CoV-2 pandemic alerted the Philippine government to impose the enhanced community quarantine (ECQ) as a means to hamper human mobility and interaction and eventually diminish transmission. Due to severe limitations in accessibility to basic needs due to ECQ, the government devised amelioration programs. A year after the declaration of the SARS-CoV-2 pandemic, variants of concern were detected locally. Consequently, there is a necessity to prepare reinstatement of strict non-pharmaceutical interventions while meeting the food-related basic needs of the population. Studies related to food distribution during a strict community quarantine have been lacking. The importance of allocating provisions during extreme pandemic measures should be properly analyzed, especially when attempts had been made by local government units. Methods: This study devised an agent-based model (ABM) to observe the effects of the food relief system in mitigating the disease during Davao City ECQ when two variants are present in two adjacent villages. These relief distribution types are as follows: “regular and sufficient,” “regular but insufficient,” and “irregular” relief type. In total, three barangay scenarios were considered. Results and discussion: For the worst-case scenario, wherein a lot of infections are anticipated, the results show that the “irregular” relief type peaked at the highest number of cases, while the “regular and sufficient” relief type showed little to almost no new cases. The compromise-case scenario showed almost no difference between “regular but insufficient” and “regular and sufficient.” For the best-case scenario, the three relief types showed low average infected cases with almost small variance. The model was then compared, situationally, with Davao City barangays during ECQ and recommended which food relief type applies to the barangays. This could serve as a baseline on how food reliefs could be optimally distributed in cases where barangay conditions differently affect and transmit the SARS-CoV-2 virus of different variants with varying transmission rates within a community. Further development of the model should potentially be useful for decision support not only during pandemics but also in contexts where resource allocation to a community is involved

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)

In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field