161 research outputs found

    Statecharts for Gene Network Modeling

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    State diagrams (stategraphs) are suitable for describing the behavior of dynamic systems. However, when they are used to model large and complex systems, determining the states and transitions among them can be overwhelming, due to their flat, unstratified structure. In this article, we present the use of statecharts as a novel way of modeling complex gene networks. Statecharts extend conventional state diagrams with features such as nested hierarchy, recursion, and concurrency. These features are commonly utilized in engineering for designing complex systems and can enable us to model complex gene networks in an efficient and systematic way. We modeled five key gene network motifs, simple regulation, autoregulation, feed-forward loop, single-input module, and dense overlapping regulon, using statecharts. Specifically, utilizing nested hierarchy and recursion, we were able to model a complex interlocked feed-forward loop network in a highly structured way, demonstrating the potential of our approach for modeling large and complex gene networks

    Single and multi-subject clustering of flow cytometry data for cell-type identification and anomaly detection

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    BACKGROUND: Measurement of various markers of single cells using flow cytometry has several biological applications. These applications include improving our understanding of behavior of cellular systems, identifying rare cell populations and personalized medication. A common critical issue in the existing methods is identification of the number of cellular populations which heavily affects the accuracy of results. Furthermore, anomaly detection is crucial in flow cytometry experiments. In this work, we propose a two-stage clustering technique for cell type identification in single subject flow cytometry data and extend it for anomaly detection among multiple subjects. RESULTS: Our experimentation on 42 flow cytometry datasets indicates high performance and accurate clustering (F-measure > 91 %) in identifying main cellular populations. Furthermore, our anomaly detection technique evaluated on Acute Myeloid Leukemia dataset results in only <2 % false positives

    Investigación acerca de los imaginarios en una selección de sermones de Nahj al-Balaghah desde la perspectiva de Ibn Abi al-Harid.

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    Nahj al-Balaghah, el Sol. Todo el significado del conocimiento humano que surge de la palabra de Rabbani, con rayos de retórica y elocuencia, como el Sagrado Corán, ha evitado que las papas se erosionen, y ha reconocido a todos en su contra. Este artículo trata de resaltar los elementos retóricos en las palabras del Imam Ali (as) y de investigar las causas y los factores de su efecto en las resplandecientes audiencias de los hechizos de Nahj al-Balaghah en ensayos cortos. El uso de metáforas y analogías para visualizar y expresar los puntos de vista y las circunstancias de tiempo y lugar han sido exclusivas de las palabras del Imam Ali (La paz sea con él). Ibn Abial-Hadid ha sido capaz de esculpir las costosas puertas de esta obra de Javid con inteligencia y frescura, y expresar e interpretar el bello imaginario en términos de significados y palabras.

    A Low Power Test Pattern Generator for BIST

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