Mechanism of delayed seed germination caused by high temperature during grain filling in rice (Oryza sativa L.)

High temperature during grain filling considerably reduces yield and quality in rice (Oryza sativa L.); however, how high temperature affects seed germination of the next generation is not yet well understood. Here, we report that seeds from plants exposed to high temperature during the grain filling stage germinated significantly later than seeds from unstressed plants. This delay remained even after dormancy release treatments, suggesting that it was not due to primary seed dormancy determined during grain filling. In imbibed embryos of heat-stressed seeds, expression of abscisic acid (ABA) biosynthesis genes (OsNCEDs) was higher than in those of control seeds, whereas that of ABA catabolism genes (OsABA8′OHs) was lower. In the aleurone layer, despite no change in GA signaling as evidenced by no effect of heat stress on OsGAMYB gene expression, the transcripts of α-amylase genes OsAmy1C, OsAmy3B, and OsAmy3E were significantly down-regulated in heat-stressed seeds in comparison with controls. Changes in promoter methylation levels were consistent with transcriptional changes of ABA catabolism-related and α-amylase genes. These data suggest that high temperature during grain filling results in DNA methylation of ABA catabolism-related and α-amylase gene promoters, delaying germination of heat-stressed seeds

Regulation of reactive oxygen species and phytohormones in osmotic stress tolerance during seed germination in indica rice

Climate change due to global warming is now affecting agricultural production worldwide. In rice, one of the most important crops, water limitation due to irregular rainfall in rainfed lowlands during crop growth limits yield. Dry direct-sowing has been proposed as a water-efficient approach to cope with water stress during rice growth, but poor seedling establishment due to drought during germination and emergence is a problem. Here, we germinated indica rice cultivars Rc348 (drought tolerant) and Rc10 (drought sensitive) under osmotic stress induced by PEG to elucidate mechanisms of germination under drought. Rc348 had higher germination rate and germination index under severe osmotic stress of −1.5 MPa, above those of Rc10. Rc348 showed up-regulated GA biosynthesis, down-regulated ABA catabolism, and up-regulated α-amylase gene expression in imbibed seeds under PEG treatment compared to that of Rc10. During germination, reactive oxygen species (ROS) play important roles in antagonism between gibberellic acid (GA) and abscisic acid (ABA). Embryo of Rc348 treated with PEG had significantly greater expression of NADPH oxidase genes and higher endogenous ROS levels, together with significantly increased endogenous GA1, GA4 and ABA contents compared to that of Rc10. In aleurone layers treated with exogenous GA, expression of α-amylase genes was higher in Rc348 than in Rc10, and expression of NADPH oxidase genes was enhanced with significantly higher ROS content in Rc348, suggesting higher sensitivity of GA to ROS production and starch degradation in aleurone cells of Rc348. These results suggest that the osmotic stress tolerance of Rc348 is due to enhancement of ROS production, GA biosynthesis, and GA sensitivity, resulting in a higher germination rate under osmotic stress

Photoperiodic Regulation of Tuber Enlargement in Water Yam

In tuberous crops, tuber enlargement is one of the most important target traits for yield formation. It has long been known that tuber growth in yams is enhanced by short-day (SD) conditions, but the mechanism of tuber enlargement remains unknown. Here, we analyzed the photoperiodic regulation of tuber enlargement in water yam (Dioscorea alata L.). The photoperiod experiments in seedlings showed that tuber enlargement is initiated under SD conditions (≤10 h daylength) within 20 days of treatment. DaFT2, a FLOWERING LOCUS T (FT)-like gene, was upregulated in SD and downregulated in long-day (LD) conditions in tubers, suggesting that DaFT2 promotes tuber enlargement. DaFT1, the other FT-like gene, was significantly upregulated only in the leaves under LD, and its expression pattern was opposite to that of DaFT2 in the tubers. A night-break experiment showed that tuber growth was inhibited by red light in the dark period. These results suggest that the tuber enlargement of water yam is completely dependent on the photoperiod and that it involves an FT gene-mediated mechanism in response to the SD condition by red light sensing

Bulbil Formation on Water Yam (<i>Dioscorea alata</i> L.) Is Promoted by Waterlogged Soil

The formation of bulbils, which are storage organs, is an important agronomic trait and a unique morphological feature in the vegetative reproduction of yam. We found a landrace of water yam (Dioscorea alata L.), which rarely forms bulbils, that produces bulbils during periods of high rainfall. We investigated the physiological mechanism of bulbil formation in response to over-moist soil and relevant factors at the single plant level. Waterlogging (WL) treatment markedly increased the number of bulbils initiated, predominantly toward the upper nodes. This formed-bulbil was an accessory bud developed as a storage organ in leaf axils. Photosynthetic capacity decreased under WL, attributed to stress-induced stomatal closure. WL stress also reduced dry matter partitioning to the belowground organs. During tuber enlargement in WL plants, photosynthetic products accumulated in the aboveground organs and were transported to the bulbils as a result of reduced translocation to belowground organs. We investigated the effect of abscisic acid (ABA) on bulbil formation on the basis of changes in the sink–source balance in response to WL stress. ABA treatment of leaf axils enhanced bulbil formation in unstressed plants, suggesting that increased ABA is one of the factors that initiate bulbils. Our study shows that bulbil initiation occurs as a result of changes in physiological conditions in response to WL stress. This finding may provide fundamental information for the control of bulbil production. This response of bulbil formation, as an environmentally adaptive trait of the tropical water yam, may underlie the survival strategy of vegetatively propagated plants

Genetic Variations in Dry Matter Production, Nitrogen Uptake, and Nitrogen Use Efficiency in the AA Genome Oryza Species Grown under Different Nitrogen Conditions

To clarify the genotypic variation of nitrogen (N) response in the AA genome Oryza species, we investigated dry matter production, N uptake, N and water use efficiencies (NUE and WUE), bleeding sap rate (BR), and root morphological traits at vegetative stage in 6 cultivars and 4 strains of 6 species (O. sativa, O. glaberrima, O. barthii, O. nivara, O. meridionalis, and O. rufipogon) grown under standard N (SN) and low N (LN) conditions. Some wild Oryza strains and O. glaberrima showed high dry matter production under both N conditions. In most plants, total dry weight decreased and root dry weight increased under the LN condition, resulting in decreased top-root ratio. In japonica cultivars of O. sativa, however, these traits were unaffected by the N condition. There were no significant differences in WUE with plant species or N conditions. In all plants, however, NUE was higher in the LN than SN condition, and was conspicuously high in most wild Oryza species and O. glaberrima. Some of them showed increased capacity of nitrate-N (NO3-N) uptake under the LN condition. In cultivars and strains with a high NUE, root dry weight, root surface area, and BR were also higher under the LN condition. These results suggest that a high NUE is associated with the development of a root system, increased BR, and probably increased capacity of NO3-N uptake. This study revealed the presence of superior wild Oryza strains for growth under LN that may be a promising genetic resource for low N-input agriculture

Additional file 6: of A hairy-leaf gene, BLANKET LEAF, of wild Oryza nivara increases photosynthetic water use efficiency in rice

Figure S2. Breeding scheme for the plant materials used in this study. (PPTX 38 kb

Additional file 5: of A hairy-leaf gene, BLANKET LEAF, of wild Oryza nivara increases photosynthetic water use efficiency in rice

Table S4. Gene annotation by RAP-DB in BKL region. (XLSX 29 kb