Escape from the cage: Ultrafast structural dynamics of photodissociation reactions observed with X-ray solution scattering

The environment of a molecule is known to greatly impact the course of a reaction. Such an environment can, for instance, be the solvent in a solution phase reaction or the amino acid residues surrounding a chromophore in photoreceptor proteins. For a deeper understanding of the influence of the molecular environment, a structural insight into the underlying mechanisms is necessary. In this work, time-resolved X-ray techniques are applied to directly observe the photoinduced structural dynamics of chromophores and their interaction with the environment. Solvent-solute interactions in the photodissociation reactions of triiodide and diiodomethane in solution were investigated using X-ray Solution Scattering (XSS). The studies give direct insight into the structural dynamics of the solute and the solvent cage. Further, we observe solvent-dependent branching ratios between geminate and non-geminate recombination. To investigate the solvent rearrangement during a reaction in more detail, both XSS experiments and molecular dynamics simulations on the photoionisation of aqueous iodide were performed. Comparison of experimental and simulated data reveal the ultrafast breaking of the initial solvent cage and formation of a new hydrogen bonding network. Finally, the light-induced structural dynamics in photoreceptor proteins were observed using both XSS and Serial Crystallography (SX). The results from SX studies on photolyases and phytochromes reveal how the amino acid residues around the chromophore move to accommodate the changes in structure and charge distribution on the chromophore. This work presents the potential of time-resolved studies performed at X-ray Free Electron Lasers to gain direct insight into the structural dynamics of photo-initiated reactions and the complex interplay between chromophores and their environment

Invasion of ovarian cancer cells is induced by PITX2-mediated activation of TGF-β and Activin-A

Background:Most ovarian cancers are highly invasive in nature and the high burden of metastatic disease make them a leading cause of mortality among all gynaecological malignancies. The homeodomain transcription factor, PITX2 is associated with cancer in different tissues. Our previous studies demonstrated increased PITX2 expression in human ovarian tumours. Growing evidence linking activation of TGF-β pathway by homeodomain proteins prompted us to look for the possible involvement of this signalling pathway in PITX2-mediated progression of ovarian cancer. Methods: The status of TGF-β signalling in human ovarian tissues was assessed by immunohistochemistry. The expression level of TGFB/INHBA and other invasion-associated genes was measured by quantitative-PCR (Q-PCR) and Western Blot after transfection/treatments with clones/reagents in normal/cancer cells. The physiological effect of PITX2 on invasion/motility was checked by matrigel invasion and wound healing assay. The PITX2- and activin-induced epithelial-mesenchymal transition (EMT) was evaluated by Q-PCR of respective markers and confocal/phase-contrast imaging of cells. Results: Human ovarian tumours showed enhanced TGF-β signalling. Our study uncovers the PITX2-induced expression of TGFB1/2/3 as well as INHBA genes (p < 0.01) followed by SMAD2/3-dependent TGF-β signalling pathway. PITX2-induced TGF-β pathway regulated the expression of invasion-associated genes, SNAI1, CDH1 and MMP9 (p < 0.01) that accounted for enhanced motility/invasion of ovarian cancers. Snail and MMP9 acted as important mediators of PITX2-induced invasiveness of ovarian cancer cells. PITX2 over-expression resulted in loss of epithelial markers (p < 0.01) and gain of mesenchymal markers (p < 0.01) that contributed significantly to ovarian oncogenesis. PITX2-induced INHBA expression (p < 0.01) contributed to EMT in both normal and ovarian cancer cells. Conclusions: Overall, our findings suggest a significant contributory role of PITX2 in promoting invasive behaviour of ovarian cancer cells through up-regulation of TGFB/INHBA. We have also identified the previously unknown involvement of activin-A in promoting EMT. Our work provides novel mechanistic insights into the invasive behavior of ovarian cancer cells. The extension of this study have the potential for therapeutic applications in future

Sequential and Site-Specific On-Surface Synthesis on a Bulk Insulator

Kittelmann M, Nimmrich M, Lindner R, Gourdon A, Kühnle A. Sequential and Site-Specific On-Surface Synthesis on a Bulk Insulator. ACS Nano. 2013;7(6):5614-5620.The bottom-up construction of functional devices from molecular building blocks offers great potential in tailoring materials properties and functionality with utmost control. An important step toward exploiting bottom-up construction for real-life applications is the creation of covalently bonded structures that provide sufficient stability as well as superior charge transport properties over reversibly linked self-assembled structures. On-surface synthesis has emerged as a promising strategy for fabricating stable, covalently bound molecular structure on surfaces. So far, a majority of the structures created by this method have been obtained from a rather simple one-step processing approach. But the on-surface preparation of complex structures will require the possibility to carry out various reaction steps in a sequential manner as done In solution chemistry. Only one example exists in literature in which a hierarchical strategy is followed to enhance structural complexity and reliability on a metallic surface. Future molecular electronic application will, however, require transferring these strategies to nonconducting surfaces. Bulk insulating substrates are known to pose significant challenges to on-surface synthesis due to the absence of a metal catalyst and their low surface energy, frequently resulting In molecule desorption rather than reaction activation. By carefully selecting a suitable precursor molecule, we succeeded in performing a two-step linking reaction on a bulk Insulating surface. Besides a firm anchoring toward the substrate surface, the reaction sites and sequential order are encoded In the molecular structure, providing so far unmatched reaction control in on-surface synthesis on a bulk insulating substrate

From dewetting to wetting molecular layers:C60 on CaCO3(1014) as a case study

Rahe P, Lindner R, Kittelmann M, Nimmrich M, Kühnle A. From dewetting to wetting molecular layers:C60 on CaCO3(1014) as a case study. Physical Chemistry Chemical Physics. 2012;14(18):6544-6548.We report the formation of extended molecular layers of C-60 molecules on a dielectric surface at room temperature. In sharp contrast to previous C-60 adsorption studies on prototypical ionic crystal surfaces, a wetting layer is obtained when choosing the calcite (CaCO3)(10 (1) over bar4) surface as a substrate. Non-contact atomic force microscopy data reveal an excellent match of the hexagonal lattice of the molecular layer with the unit cell dimension of CaCO3(10 (1) over bar4) in the [01 (1) over bar0] direction, while a lattice mismatch along the [(4) over bar(2) over bar 61] direction results in a large-scale moire modulation. Overall, a (2 x 15) wetting layer is obtained. The distinct difference observed microscopically upon C-60 adsorption on CaCO3(10 (1) over bar4) compared to other dielectric surfaces is explained by a macroscopic picture based on surface energies. Our example demonstrates that this simple surface-energy based approach can provide a valuable estimate for choosing molecule-insulator systems suitable for molecular self-assembly at room temperature

Novel surface expression of reticulocalbin 1 on bone endothelial cells and human prostate cancer cells is regulated by TNF-Α

An unbiased cDNA expression phage library derived from bone-marrow endothelial cells was used to identify novel surface adhesion molecules that might participate in metastasis. Herein we report that reticulocalbin 1 (RCN1) is a cell surface-associated protein on both endothelial (EC) and prostate cancer (PCa) cell lines. RCN1 is an H/KDEL protein with six EF-hand, calcium-binding motifs, found in the endoplasmic reticulum. Our data indicate that RCN1 also is expressed on the cell surface of several endothelial cell lines, including human dermal microvascular endothelial cells (HDMVECs), bone marrow endothelial cells (BMEC), and transformed human bone marrow endothelial cells (TrHBMEC). While RCN1 protein levels were highest in lysates from HDMVEC, this difference was not statistically significant compared BMEC and TrHBMEC. Given preferential adhesion of PCa to bone-marrow EC, these data suggest that RCN1 is unlikely to account for the preferential metastasis of PCa to bone. In addition, there was not a statistically significant difference in total RCN1 protein expression among the PCa cell lines. RCN1 also was expressed on the surface of several PCa cell lines, including those of the LNCaP human PCa progression model and the highly metastatic PC-3 cell line. Interestingly, RCN1 expression on the cell surface was upregulated by tumor necrosis factor alpha treatment of bone-marrow endothelial cells. Taken together, we show cell surface localization of RCN1 that has not been described previously for either PCa or BMEC and that the surface expression on BMEC is regulated by pro-inflammatory TNF-Α. J. Cell. Biochem. 104: 2298–2309, 2008. © 2008 Wiley-Liss, Inc.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/60470/1/21785_ftp.pd

Transition of Molecule Orientation during Adsorption of Terephthalic Acid on Rutile TiO2(110)

Rahe P, Nimmrich M, Nefedov A, Naboka M, Wöll C, Kühnle A. Transition of Molecule Orientation during Adsorption of Terephthalic Acid on Rutile TiO2(110). Journal of Physical Chemistry C. 2009;113(40):17471-17478.The coverage-dependent mode of adsorption of terephthalic acid [C6H4(COOH)(2), TPA] on rutile TiO2(110) was investigated by means of noncontact atomic force microscopy (NC-AFM) and near-edge X-ray absorption fine structure (NEXAFS) spectroscopy under ultrahigh vacuum conditions at room temperature. Individual molecules are observed to adsorb in an disordered, flat-lying geometry at low coverages up to similar to 0.3 monolayer (ML). The molecules are immobile at room temperature. implying a diffusion barrier larger than 0.8 eV. This rather high value might be explained by anchoring to surface defect sites. A transition from flat-lying to upright-oriented molecules is revealed by NEXAFS when saturation coverage is achieved. High-resolution NC-AFM images reveal two different Structures at coverages between similar to 0.8 and 1 ML: (i) a well-ordered (2 x 1) structure and (ii) a structure of single and paired rows oriented along the [001] crystallographic direction. The latter structure might originate from a pairwise interaction of two neighboring molecules through the top carboxyl groups. Further increase in the exposure results in it saturation of the corresponding signal in the NEXAFS spectra, revealing that the growth of TPA oil TiO2(110) at room temperature is self-limiting

On-Surface Covalent Linking of Organic Building Blocks on a Bulk Insulator

Kittelmann M, Rahe P, Nimmrich M, Hauke CM, Gourdon A, Kühnle A. On-Surface Covalent Linking of Organic Building Blocks on a Bulk Insulator. ACS Nano. 2011;5(10):8420-8425.On-surface synthesis in ultrahigh vacuum provides a promising strategy for creating thermally and chemically stable molecular structures at surfaces. The two-dimensional confinement of the educts, the possibility of working at higher (or lower) temperatures in the absence of solvent, and the templating effect of the surface bear the potential of preparing compounds that cannot be obtained in solution. Moreover, covalently linked conjugated molecules allow for efficient electron transport and are, thus, particularly interesting for future molecular electronics applications. When having these applications in mind, electrically insulating substrates are mandatory to provide sufficient decoupling of the molecular structure from the substrate surface. So far, however, on-surface synthesis has been achieved only on metallic substrates. Here we demonstrate the covalent linking of organic molecules on a bulk insulator, namely, calcite. We deliberately employ the strong electrostatic interaction between the carboxylate groups of halide-substituted benzoic adds and the surface calcium cations to prevent molecular desorption and to reach homolytic cleavage temperatures. This allows for the formation of aryl radicals and intermolecular coupling. By varying the number and position of the halide substitution, we rationally design the resulting structures, revealing straight lines, zigzag structures, and dimers, thus providing clear evidence for the covalent linking. Our results constitute an important step toward exploiting on-surface synthesis for molecular electronics and optics applications, which require electrically insulating rather than metallic supporting substrates

Tuning Molecular Self-Assembly on Bulk Insulator Surfaces by Anchoring of the Organic Building Blocks

Rahe P, Kittelmann M, Neff JL, et al. Tuning Molecular Self-Assembly on Bulk Insulator Surfaces by Anchoring of the Organic Building Blocks. Advances Materials. 2013;25(29):3948-3956.Molecular self-assembly constitutes a versatile strategy for creating functional structures on surfaces. Tuning the subtle balance between intermolecular and molecule-surface interactions allows structure formation to be tailored at the single-molecule level. While metal surfaces usually exhibit interaction strengths in an energy range that favors molecular self-assembly, dielectric surfaces having low surface energies often lack sufficient interactions with adsorbed molecules. As a consequence, application-relevant, bulk insulating materials pose significant challenges when considering them as supporting substrates for molecular self-assembly. Here, the current status of molecular self-assembly on surfaces of wide-bandgap dielectric crystals, investigated under ultrahigh vacuum conditions at room temperature, is reviewed. To address the major issues currently limiting the applicability of molecular self-assembly principles in the case of dielectric surfaces, a systematic discussion of general strategies is provided for anchoring organic molecules to bulk insulating materials

Influence of charge transfer doping on the morphologies of C-60 islands on hydrogenated diamond C(100)-(2 x 1)

Nimmrich M, Kittelmann M, Rahe P, et al. Influence of charge transfer doping on the morphologies of C-60 islands on hydrogenated diamond C(100)-(2 x 1). Physical Review B. 2012;85(3): 35420.The adsorption and island formation of C-60 fullerenes on the hydrogenated C(100)-(2 x 1):H diamond surface is studied using high-resolution noncontact atomic force microscopy in ultrahigh vacuum. At room temperature, C-60 fullerene molecules assemble into monolayer islands, exhibiting a hexagonally close-packed internal structure. Dewetting is observed when raising the substrate temperature above approximately 505 K, resulting in two-layer high islands. In contrast to the monolayer islands, these double-layer islands form extended wetting layers. This peculiar behavior is explained by an increased molecule-substrate binding energy in the case of double-layer islands, which originates from charge transfer doping. Only upon further increasing the substrate temperature to approximately 615 K, the wetting layer desorbs, corresponding to a binding energy of the charge transfer-stabilized film of 1.7 eV

Growth kinetics of racemic heptahelicene-2-carboxylic acid nanowires on calcite (104)

Einax M, Richter T, Nimmrich M, et al. Growth kinetics of racemic heptahelicene-2-carboxylic acid nanowires on calcite (104). Journal of Chemical Physics. 2016;145(13):134702.Molecular self-assembly of racemic heptahelicene-2-carboxylic acid on a dielectric substrate at room temperature can be used to generate wire-like organic nanostructures consisting of single and double molecular rows. By means of non-contact atomic force microscopy, we investigate the growth of the wire-like pattern after deposition by experimental and theoretical means. From analyzing the time dependence of the mean row length, two distinct regimes were found. At the early post-deposition stage, the mean length grows in time. Subsequently, a crossover to a second regime is observed, where the mean row length remains nearly constant. We explain these findings by a mean-field rate equation approach providing a comprehensive picture of the growth kinetics. As a result, we demonstrate that the crossover between the two distinct regimes is accomplished by vanishing of the homochiral single rows. At later stages only heterochiral double row structures remain. Published by AIP Publishing