Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

ICAR-NIASM Annual Report 2016-17 (Hindi Ver.)

Not AvailableA major effort during the year was made on the development of infrastructure facilities aswell as research facilities. The construction of School Buildings, Hostel and Residential complex at MIDC, Baramati are progressing satisfactorily. Livestock experimentation facility has been developed in south-side farm whereas a Hi-tech Greenhouse construction in progress has provision for controlled climate. A large number of sophisticated research equipment was also procured.Not Availabl

Semi-Supervised Regression and System Identification

System Identification and Machine Learning are developing mostly as independent subjects, although the underlying problem is the same: To be able to associate “outputs” with “inputs”. Particular areas in machine learning of substantial current interest are manifold learning and unsupervised and semi-supervised regression. We outline a general approach to semi-supervised regression, describe its links to Local Linear Embedding, and illustrate its use for various problems. In particular, we discuss how these techniques have a potential interest for the system identification world

Suboptimal Solutions to Dynamic Optimization Problems via Approximations of the Policy Functions

The approximation of the optimal policy functions is investigated for dynamic optimization problems with an objective that is additive over a finite number of stages. The distance between optimal and suboptimal values of the objective functional is estimated, in terms of the errors in approximating the optimal policy functions at the various stages. Smoothness properties are derived for such functions and exploited to choose the approximating families. The approximation error is measured in the supremum norm, in such a way to control the error propagation from stage to stage. Nonlinear approximators corresponding to Gaussian radial-basis-function networks with adjustable centers and widths are considered. Conditions are defined, guaranteeing that the number of Gaussians (hence, the number of parameters to be adjusted) does not grow “too fast” with the dimension of the state vector. The results help to mitigate the curse of dimensionality in dynamic optimization. An example of application is given and the use of the estimates is illustrated via a numerical simulation