Additional file 1: Figure S1. of The molecular characterisation of Escherichia coli K1 isolated from neonatal nasogastric feeding tubes

Genomic analysis of E. coli sequence types using the Comprehensive Antibiotic Database (CARD: http://arpcard.mcmaster.ca ). (DOC 1740 kb

Maximum Likelihood tree based on the concatenated sequences (3,036 bp) of the seven MLST loci.

<p>The tree is drawn to scale using MEGA, with 1000 bootstrap replicates.</p

<i>De novo</i> assembly statistics for the eleven newly sequenced <i>Cronobacter</i> strains.

a<p>nd indicates that scaffolding was not performed due to lack of mate-paired libraries.</p

Graph representing the rarefaction of the <i>Cronobacter</i> pan genome, generated using the 14 <i>Cronobacter</i> genomes included in this study.

<p>Graph representing the rarefaction of the <i>Cronobacter</i> pan genome, generated using the 14 <i>Cronobacter</i> genomes included in this study.</p

<i>Cronobacter</i> fimbriae cluster designations.

<p><i>Cronobacter</i> fimbriae cluster designations.</p

Eleven newly assembled and three publicly available <i>Cronobacter</i> genomes analyzed in this study.

a<p>Strains for which genome sequence is publicly available; E899 appears to lack plasmid sequences.</p>b<p><i>C. malonaticus</i> species type strain (LMG 23826^T).</p>c<p><i>C. turicensis</i> species type strain (LMG 23827^T).</p>d<p><i>C. dublinensis</i> species type strain (LMG 23823^T).</p>e<p><i>C. condimenti</i> species type strain (LMG 26250^T).</p>f<p>Sizes of newly sequenced genomes were derived from the sum of the length of all contigs from <i>de novo</i> assembly.</p