A NWB-based dataset and processing pipeline of human single-neuron activity during a declarative memory task

A challenge for data sharing in systems neuroscience is the multitude of different data formats used. Neurodata Without Borders: Neurophysiology 2.0 (NWB:N) has emerged as a standardized data format for the storage of cellular-level data together with meta-data, stimulus information, and behavior. A key next step to facilitate NWB:N adoption is to provide easy to use processing pipelines to import/export data from/to NWB:N. Here, we present a NWB-formatted dataset of 1863 single neurons recorded from the medial temporal lobes of 59 human subjects undergoing intracranial monitoring while they performed a recognition memory task. We provide code to analyze and export/import stimuli, behavior, and electrophysiological recordings to/from NWB in both MATLAB and Python. The data files are NWB:N compliant, which affords interoperability between programming languages and operating systems. This combined data and code release is a case study for how to utilize NWB:N for human single-neuron recordings and enables easy re-use of this hard-to-obtain data for both teaching and research on the mechanisms of human memory

Small-scale perturbation on soft bottom macrozoobenthos after mechanical cleaning operations in a Central-Western Mediterranean lagoon

1 - Sardinia Island (Italy), even if relatively small, has over 100 lagoons totalling some 12,000 ha. Yet their potential yield remain often unexpressed because they are subjected to environmental stress and degradation. As far as benthic communities are concerned, one of the main disturbances is certainly the accumulation of shell detritus, which progressively modifies the way benthic organisms interact with the sediment. 2 - An experimental dredging study was therefore performed in the Calich lagoon (NW Sardinia), due to its particular interest for fishing activities and potential semi-intensive mollusc culture. Changes in benthic community structure were examined in two areas of the lagoon by analysing both the demographic profile of several abundant species and the features of sedimentary matrix immediately after the cleaning operations and seven months later. Data obtained were compared with those collected in undisturbed areas of the lagoon. This allowed us to evaluate the effects of dredging operations on the benthic assemblages unaffected by natural temporal shifts of the system. 3 - Univariate and multivariate analyses indicated a strong relationship between macrofaunal community structure and intensity of the cleaning activities. At the dredged sites benthic fauna was not depleted but did exhibit higher diversity and evenness indexes than at the undisturbed sites. This seemed to be a consequence of decrease in the density of some abundant species at the dredged sites. Furthermore, a general reduction of total organic content was observed in the upper sediment layer. Lastly, the cleaning method employed is discussed in relation to its potential for impacting the benthos

Far-infrared spectroscopy of a lensed starburst: a blind redshift from Herschel

We report the redshift of HATLAS J132427.0+284452 (hereafter HATLAS J132427), a gravitationally lensed starburst galaxy, the first determined 'blind' by the Herschel Space Observatory. This is achieved via the detection of [C II] consistent with z = 1.68 in a far-infrared spectrum taken with the SPIRE Fourier Transform Spectrometer. We demonstrate that the [C II] redshift is secure via detections of CO J = 2 - 1 and 3 - 2 using the Combined Array for Research in Millimeter-wave Astronomy and the Institut de Radioastronomie Millimetrique's Plateau de Bure Interferometer. The intrinsic properties appear typical of high-redshift starbursts despite the high lensing-amplified fluxes, proving the ability of the FTS to probe this population with the aid of lensing. The blind detection of [C II] demonstrates the potential of the SAFARI imaging spectrometer, proposed for the much more sensitive SPICA mission, to determine redshifts of multiple dusty galaxies simultaneously without the benefit of lensing.Comment: 6 pages, 5 figures, accepted for publication in MNRAS as a Lette

The temperature dependence of the far-infrared-radio correlation in the Herschel-ATLAS

Date of Acceptance: 03/09/2014We use 10 387 galaxies from the Herschel Astrophysical TeraHertz Large Area Survey (H-ATLAS) to probe the far-infrared radio correlation (FIRC) of star-forming galaxies as a function of redshift, wavelength, and effective dust temperature. All of the sources in our 250 μm-selected sample have spectroscopic redshifts, as well as 1.4 GHz flux density estimates measured from the Faint Images of the Radio Sky at Twenty centimetres (FIRST) survey. This enables us to study not only individual sources, but also the average properties of the 250 μm-selected population using median stacking techniques. We find that individual sources detected at ≥5σ in both the H-ATLAS and FIRST data have logarithmic flux ratios (i.e. FIRC qλ parameters) consistent with previous studies of the FIRC. In contrast, the stacked values show larger qλ, suggesting excess far-IR flux density/luminosity in 250 μm-selected sources above what has been seen in previous analyses. In addition, we find evidence that 250 μm sources with warm dust spectral energy distributions have a larger 1.4 GHz luminosity than the cooler sources in our sample. Though we find no evidence for redshift evolution of the monochromatic FIRC, our analysis reveals significant temperature dependence. Whilst the FIRC is reasonably constant with temperature at 100 μm, we find increasing inverse correlation with temperature as we probe longer PACS and SPIRE wavelengths. These results may have important implications for the use of monochromatic dust luminosity as a star formation rate indicator in star-forming galaxies, and in the future, for using radio data to determine galaxy star formation ratesPeer reviewe

Far-infrared emission in luminous quasars accompanied by nuclear outflows

Combining large-area optical quasar surveys with the new far-infrared (FIR) Herschel-ATLAS Data Release 1, we search for an observational signature associated with the minority of quasars possessing bright FIR luminosities. We find that FIR-bright quasars show broad C IV emission-line blueshifts in excess of that expected from the optical luminosity alone, indicating particularly powerful nuclear outflows. The quasars show no signs of having redder optical colours than the general ensemble of optically selected quasars, ruling out differences in line-of-sight dust within the host galaxies. We postulate that these objects may be caught in a special evolutionary phase, with unobscured, high black hole accretion rates and correspondingly strong nuclear outflows. The high FIR emission found in these objects is then either a result of star formation related to the outflow, or is due to dust within the host galaxy illuminated by the quasar. We are thus directly witnessing coincident small-scale nuclear processes and galaxy-wide activity, commonly invoked in galaxy simulations that rely on feedback from quasars to influence galaxy evolution

H-ATLAS/GAMA and HeViCS - dusty early-type galaxies in different environments

NKA acknowledges the support of the Science and Technology Facilities Council. LD, RJI and SJM acknowledge support from the European Research Council Advanced Grant COSMICISM. IDL gratefully acknowledges the support of the Flemish Fund for Scientific Research (FWO-Vlaanderen). KR acknowledges support from the European Research Council Starting Grant SEDmorph (P.I. V. Wild). Date of acceptance: 22/05/2015The Herschel Space Observatory has had a tremendous impact on the study of extragalactic dust. Specifically, early-type galaxies (ETG) have been the focus of several studies. In this paper, we combine results from two Herschel studies -a Virgo cluster study Herschel Virgo Cluster Survey (HeViCS) and a broader, low-redshift Herschel-Astrophysical Terahertz Large Area Survey (H-ATLAS)/Galaxy and Mass Assembly (GAMA) study -and contrast the dust and associated properties for similar mass galaxies. This comparison is motivated by differences in results exhibited between multiple Herschel studies of ETG. A comparison between consistent modified blackbody derived dust mass is carried out, revealing strong differences between the two samples in both dust mass and dust-to-stellar mass ratio. In particular, the HeViCS sample lacks massive ETG with as high a specific dust content as found in H-ATLAS. This is most likely connected with the difference in environment for the two samples. We calculate nearest neighbour environment densities in a consistent way, showing that H-ATLAS ETG occupy sparser regions of the local Universe, whereas HeViCS ETG occupy dense regions. This is also true for ETG that are not Herschel-detected but are in the Virgo and GAMA parent samples. Spectral energy distributions are fit to the panchromatic data. From these, we find that in H-ATLAS the specific star formation rate anticorrelates with stellar mass and reaches values as high as in our Galaxy. On the other hand HeViCS ETG appear to have little star formation. Based on the trends found here, H-ATLAS ETG are thought to have more extended star formation histories and a younger stellar population than HeViCS ETG.Publisher PDFPeer reviewe

Detections of CO Molecular Gas in 24um-Bright ULIRGs at z~2 in the Spitzer First Look Survey

We present CO observations of 9 ULIRGs at z~2 with S(24\mu m)>1mJy, previously confirmed with the mid-IR spectra in the Spitzer First Look Survey. All targets are required to have accurate redshifts from Keck/GEMINI near-IR spectra. Using the Plateau de Bure millimeter-wave Interferometer (PdBI) at IRAM, we detect CO J(3-2) [7 objects] or J(2-1) [1 object] line emission from 8 sources with integrated intensities Ic ~(5-9)sigma. The CO detected sources have a variety of mid-IR spectra, including strong PAH, deep silicate absorption and power-law continuum, implying that these molecular gas rich objects at z~2 could be either starbursts or dust obscured AGNs. The measured line luminosity L'[CO] is (1.28-3.77)e+10[K km/s pc^2]. The averaged molecular gas mass M(H2) is 1.7e+10Msun, assuming CO-to-H2 conversion factor of 0.8Msun/[K km/s pc^2]. Three sources (33%) -- MIPS506, MIPS16144 & MIPS8342 -- have double peak velocity profiles. The CO double peaks in MIPS506 and MIPS16144 show spatial separations of 45kpc and 10.9kpc, allowing the estimates of the dynamical masses of 3.2e+11*sin^(-2)(i)Msun and 5.4e+11*sin^{-2}(i)Msun respectively. The implied gas fraction, M(gas)/M(dyn), is 3% and 4%, assuming an average inclination angle. Finally, the analysis of the HST/NIC2 images, mid-IR spectra and IR SED revealed that most of our sources are mergers, containing dust obscured AGNs dominating the luminosities at (3-6)um. Together, these results provide some evidence suggesting SMGs, bright 24um z~2 ULIRGs and QSOs could represent three different stages of a single evolutionary sequence, however, a complete physical model would require much more data, especially high spatial resolution spectroscopy.Comment: 15 pages, 8 figures, accepted for publication in ApJ

H-ATLAS: a candidate high redshift cluster/protocluster of star-forming galaxies

We investigate the region around the Planck-detected z=3.26 gravitationally lensed galaxy HATLAS J114637.9-001132 (hereinafter HATLAS12-00) using both archival Herschel data from the H-ATLAS survey and using submm data obtained with both LABOCA and SCUBA2. The lensed source is found to be surrounded by a strong overdensity of both Herschel-SPIRE sources and submm sources. We detect 17 bright (S870 >~7 mJy) sources at >4sigma closer than 5 arcmin to the lensed object at 850/870 microns. Ten of these sources have good cross-identifications with objects detected by Herschel-SPIRE which have redder colours than other sources in the field, with 350 micron flux > 250 micron flux, suggesting that they lie at high redshift. Submillimeter Array (SMA) observations localise one of these companions to ~1 arcsecond, allowing unambiguous cross identification with a 3.6 and 4.5 micron Spitzer source. The optical/near-IR spectral energy distribution (SED) of this source is measured by further observations and found to be consistent with z>2, but incompatible with lower redshifts. We conclude that this system may be a galaxy cluster/protocluster or larger scale structure that contains a number of galaxies undergoing starbursts at the same time

H-ATLAS: the far-infrared properties of galaxies in and around the coma cluster

We describe a far-infrared survey of the Coma cluster and the galaxy filament it resides within. Our survey covers an area of ∼150 deg2 observed by Herschel H-ATLAS (Herschel Astrophysical Terahertz Large Area Survey) in five bands at 100, 160, 250, 350 and 500 μm. The SDSS spectroscopic survey (mr ≤ 17.8) is used to define an area (within the virial radius) and redshift selected (4268 <v < 9700 km s−1) sample of 744 Coma cluster galaxies – the Coma Cluster Catalogue. For comparison, we also define a sample of 951 galaxies in the connecting filament – the Coma Filament Catalogue. The optical positions and parameters are used to define appropriate apertures to measure each galaxy’s far-infrared emission. We have detected 99 of 744 (13 per cent) and 422 of 951 (44 per cent) of the cluster and filament galaxies in the SPIRE 250 μm band. We consider the relative detection rates of galaxies of different morphological types finding that it is only the S0/Sa population that shows clear differences between the cluster and filament. We find no differences between the dust masses and temperatures of cluster and filament galaxies with the exception of early-type galaxy dust temperatures, which are significantly hotter in the cluster than in the filament (X-ray heating?). From a chemical evolution model, we find no evidence for different evolutionary processes (gas loss or infall) between galaxies in the cluster and filament