57 research outputs found

    A Built Environment for an Ageing Society: A subpopulation analysis of pedestrian crashes at signalized intersections in Montreal, Canada TRB 15-4619

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    Concern for pedestrian safety has grown recently because of ageing population not only in NorthAmerica but globally. Meanwhile the overrepresentation of older adults in fatal pedestrian crashes has been a longstanding problem. As sustainable transport policy becomes prevalent, planners and practitioners will have the opportunity to introduce countermeasures to better meet senior pedestrian needs. In this paper we focus on the built environment because this variable category translates into more accessible countermeasures. However, a gap in the literature makes it difficult for planners and practitioners to choose these. Past empirical studies suggest there is an observed risk increase for older adult pedestrians due to their slower walking speed, while crash history studies have yet to provide evidence for this. This gap in the literature begs the question: if there is a link between slower walking seniors and crash incidence. Two models were specified according to younger and older pedestrians involved in crashes that occurred at 191 signalized intersections in Montreal, Canada. We sought to determine if older adult pedestrian crash incidence was explained by different characteristics compared to the younger. Results not only showed that older pedestrians were more vulnerable and influenced by some different risk factors than the younger, but that they may be more responsive to some potential countermeasures

    Gene family structure, expression and functional analysis of HD-Zip III genes in angiosperm and gymnosperm forest trees

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    BACKGROUND: Class III Homeodomain Leucine Zipper (HD-Zip III) proteins have been implicated in the regulation of cambium identity, as well as primary and secondary vascular differentiation and patterning in herbaceous plants. They have been proposed to regulate wood formation but relatively little evidence is available to validate such a role. We characterised and compared HD-Zip III gene family in an angiosperm tree, Populus spp. (poplar), and the gymnosperm Picea glauca (white spruce), representing two highly evolutionarily divergent groups. RESULTS: Full-length cDNA sequences were isolated from poplar and white spruce. Phylogenetic reconstruction indicated that some of the gymnosperm sequences were derived from lineages that diverged earlier than angiosperm sequences, and seem to have been lost in angiosperm lineages. Transcript accumulation profiles were assessed by RT-qPCR on tissue panels from both species and in poplar trees in response to an inhibitor of polar auxin transport. The overall transcript profiles HD-Zip III complexes in white spruce and poplar exhibited substantial differences, reflecting their evolutionary history. Furthermore, two poplar sequences homologous to HD-Zip III genes involved in xylem development in Arabidopsis and Zinnia were over-expressed in poplar plants. PtaHB1 over-expression produced noticeable effects on petiole and primary shoot fibre development, suggesting that PtaHB1 is involved in primary xylem development. We also obtained evidence indicating that expression of PtaHB1 affected the transcriptome by altering the accumulation of 48 distinct transcripts, many of which are predicted to be involved in growth and cell wall synthesis. Most of them were down-regulated, as was the case for several of the poplar HD-Zip III sequences. No visible physiological effect of over-expression was observed on PtaHB7 transgenic trees, suggesting that PtaHB1 and PtaHB7 likely have distinct roles in tree development, which is in agreement with the functions that have been assigned to close homologs in herbaceous plants. CONCLUSIONS: This study provides an overview of HD-zip III genes related to woody plant development and identifies sequences putatively involved in secondary vascular growth in angiosperms and in gymnosperms. These gene sequences are candidate regulators of wood formation and could be a source of molecular markers for tree breeding related to wood properties

    Enjeux théoriques et pratiques du développement régional : 30 Ans de recherche au GRIR

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    Le trentième anniversaire du GRIR a été souligné au printemps 2013 par un colloque regroupant plusieurs chercheurs dans le domaine du développement local et régional. Cet ouvrage est le produit de leurs réflexions tant sur le plan théorique que pratique. Ce livre est articulé autour de trois axes : 1) la présentation des divers courants en développement régional, 2) des réflexions sur le passé et le présent des Premières Nations et 3) la présentation de cas concrets sur la prise en main du développement par les différents acteurs du territoire. Cet ouvrage est un outil permettant de constater le travail accompli en développement local et régional et de dégager des pistes de réflexion sur les avenues possibles de développement

    Infection assays in Arabidopsis reveal candidate effectors from the poplar rust fungus that promote susceptibility to bacteria and oomycete pathogens

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    Fungi of the Pucciniales order cause rust diseases which, altogether, affect thousands of plant species worldwide and pose a major threat to several crops. How rust effectors—virulence proteins delivered into infected tissues to modulate host functions— contribute to pathogen virulence remains poorly understood. Melampsora larici-populina is a devastating and widespread rust pathogen of poplar, and its genome encodes 1184 identified small secreted proteins that could potentially act as effectors. Here, following specific criteria, we selected 16 candidate effector proteins and characterized their virulence activities and subcellular localizations in the leaf cells of Arabidopsis thaliana. Infection assays using bacterial (Pseudomonas syringae) and oomycete (Hyaloperonospora arabidopsidis) pathogens revealed subsets of candidate effectors that enhanced or decreased pathogen leaf colonization. Confocal imaging of green fluorescent protein-tagged candidate effectors constitutively expressed in stable transgenic plants revealed that some protein fusions specifically accumulate in nuclei, chloroplasts, plasmodesmata and punctate cytosolic structures. Altogether, our analysis suggests that rust fungal candidate effectors target distinct cellular components in host cells to promote parasitic growth. © 2016 BSPP AND JOHN WILEY & SONS LTD

    Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters

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    BACKGROUND: The sequencing and analysis of ESTs is for now the only practical approach for large-scale gene discovery and annotation in conifers because their very large genomes are unlikely to be sequenced in the near future. Our objective was to produce extensive collections of ESTs and cDNA clones to support manufacture of cDNA microarrays and gene discovery in white spruce (Picea glauca [Moench] Voss). RESULTS: We produced 16 cDNA libraries from different tissues and a variety of treatments, and partially sequenced 50,000 cDNA clones. High quality 3' and 5' reads were assembled into 16,578 consensus sequences, 45% of which represented full length inserts. Consensus sequences derived from 5' and 3' reads of the same cDNA clone were linked to define 14,471 transcripts. A large proportion (84%) of the spruce sequences matched a pine sequence, but only 68% of the spruce transcripts had homologs in Arabidopsis or rice. Nearly all the sequences that matched the Populus trichocarpa genome (the only sequenced tree genome) also matched rice or Arabidopsis genomes. We used several sequence similarity search approaches for assignment of putative functions, including blast searches against general and specialized databases (transcription factors, cell wall related proteins), Gene Ontology term assignation and Hidden Markov Model searches against PFAM protein families and domains. In total, 70% of the spruce transcripts displayed matches to proteins of known or unknown function in the Uniref100 database (blastx e-value < 1e-10). We identified multigenic families that appeared larger in spruce than in the Arabidopsis or rice genomes. Detailed analysis of translationally controlled tumour proteins and S-adenosylmethionine synthetase families confirmed a twofold size difference. Sequences and annotations were organized in a dedicated database, SpruceDB. Several search tools were developed to mine the data either based on their occurrence in the cDNA libraries or on functional annotations. CONCLUSION: This report illustrates specific approaches for large-scale gene discovery and annotation in an organism that is very distantly related to any of the fully sequenced genomes. The ArboreaSet sequences and cDNA clones represent a valuable resource for investigations ranging from plant comparative genomics to applied conifer genetics

    Involvement of Pinus taeda MYB1 and MYB8 in phenylpropanoid metabolism and secondary cell wall biogenesis: a comparative in planta analysis

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    The involvement of two R2R3-MYB genes from Pinus taeda L., PtMYB1 and PtMYB8, in phenylpropanoid metabolism and secondary cell wall biogenesis was investigated in planta. These pine MYBs were constitutively overexpressed (OE) in Picea glauca (Moench) Voss, used as a heterologous conifer expression system. Morphological, histological, chemical (lignin and soluble phenols), and transcriptional analyses, i.e. microarray and reverse transcription quantitative PCR (RT-qPCR) were used for extensive phenotyping of MYB-overexpressing spruce plantlets. Upon germination of somatic embryos, root growth was reduced in both transgenics. Enhanced lignin deposition was also a common feature but ectopic secondary cell wall deposition was more strongly associated with PtMYB8-OE. Microarray and RT-qPCR data showed that overexpression of each MYB led to an overlapping up-regulation of many genes encoding phenylpropanoid enzymes involved in lignin monomer synthesis, while misregulation of several cell wall-related genes and other MYB transcription factors was specifically associated with PtMYB8-OE. Together, the results suggest that MYB1 and MYB8 may be part of a conserved transcriptional network involved in secondary cell wall deposition in conifers

    The Impact of Reconstructed Soils Following Oil Sands Exploitation on Aspen and Its Associated Belowground Microbiome

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    Oil sands surface mining in the Athabasca region of northern Alberta (Canada) is a significant anthropogenic disturbance that resets boreal forest development and succession to early stages. During surface mining, the vegetation is cleared, the topsoil is salvaged, and the overburden (the layer of sand and clay in between the topsoil and the oil sands) is piled (see Fig. 2 in Audet et al.1 for an explanation of the land-reclamation procedure). After mining is finished, the landforms (composed of overburden and tailings sand) are capped with organic matter-rich soil covers made of either upland-derived forest floor-mineral mix (FFMM) or a lowland-derived peat-mineral mix (PMM)2. Alberta’s oil sands deposits represent an economically viable proven reserve of about 166 billion barrels of crude bitumen covering 142,200 km2 of land in the boreal forest3. Among the three oil sands deposits in Alberta (Peace River, Cold Lake and Athabasca areas), surface mining is only possible in the Athabasca region. The surface mineable area represents a total of 4,750 km2, with 895 km2 of land already disturbed. Ecosystems affected by oil sands surface mining lose their ecological functions due to the disappearance of above- and below- ground species. It is, therefore, crucial to reclaim these areas using strategies that provide the best conditions for site recolonization in order to quickly reestablish a self-sustaining and functioning ecosystem. Reclamation is the process of recovering ecosystem services through revegetation but not necessarily with the original species

    CONSUMPTION OF NON-COW’S MILK BEVERAGES AND HEIGHT IN CHILDHOOD

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    ABSTRACT Background: Non-cow’s milk beverages among children are increasingly being consumed due to perceived health benefits. However, non-cow’s milk contains less protein and fat than cow’s milk and may not have the same effect on height. I hypothesized that consumption of non-cow’s milk beverages would be associated with lower childhood height. Methods: A cross-sectional analysis of TARGet Kids! data on healthy children 2-5 years of age was conducted. Multivariate linear regression models were used to test the association between daily volume of non-cow’s milk beverage consumption and height-for-age z-scores. Results: Higher non-cow’s milk consumption was associated with lower childhood height. Each daily cup of non-cow’s milk was associated with a lower height-for-age z-score of 0.11 (95% CI: 0.16, 0.05, PM.Sc.2019-11-07 00:00:0
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