The differential impact of a native and a non-native ragwort species (Senecioneae) on the first and second trophic level of the rhizosphere food web

Whereas the impact of exotic plant species on above-ground biota is relatively well-documented, far less is known about the effects of non-indigenous plants on the first and second trophic level of the rhizosphere food web. Here, rhizosphere communities of the invasive narrow-leaved ragwort Senecio inaequidens and the native tansy ragwort Jacobaea vulgaris, co-occurring in three semi-natural habitats are compared. For both species, two life stages were taken into consideration. Quantitative PCR assays for the analyses of bacterial and fungal communities at a high taxonomic level were optimized, and it was investigated whether changes in the primary decomposer community were translated in alterations in bacterivorous and fungivorous nematode communities. In contrast to J. vulgaris, small but significant reductions were observed for Actinobacteria and Bacteroidetes (both p < 0.05) in case of the invasive S. inaequidens. More pronounced changes were detected for the overall nematode community density, and, more specifically, for the bacterivorous genus Anaplectus and the family Monhysteridae (both p < 0.05), as well as the necromenic Pristionchus (p < 0.001). At high taxonomic level, no differences were observed in fungal rhizosphere communities between native and non-native ragwort species. The impact of plant developmental stages on rhizosphere biota was prominent. The overall bacterial and fungal biomasses, as well as a remarkably consistent set of constituents (Actinobacteria, α- and β-Proteobacteria and Bacteroidetes) were negatively affected by plant stage for both ragwort species. Although later developmental stages of plants generally coincided with lower levels for individual nematode taxa, densities of the fungivorous genera Diphtherophora and Tylolaimophorus remain unaltered. Hence, even at a high taxonomic level, differential effects of native and non-native ragwort could be pinpointed. However, plant developmental stage has a more prominent impact and this impact was similar in nature for both native and non-native ragwort species

Spatial distribution of soil nematodes relates to soil organic matter and life strategy

Soils are among the most biodiverse and densely inhabited environments on our planet. However, there is little understanding of spatial distribution patterns of belowground biota, and this hampers progress in understanding species interactions in belowground communities. We investigated the spatial distribution of nematodes, which are highly abundant and diverse metazoans in most soil ecosystems. To gain insight into nematode patchiness, we mapped distribution patterns in twelve apparently homogeneous agricultural fields (100 m × 100 m each) with equal representation of three soil textures (marine clay, river clay and sandy soil). Quantitative PCRs were used to measure the abundances of 48 distinct nematode taxa in ≈1200 plots. Multivariate analysis showed that within this selection of sites, soil texture more strongly affected soil nematode communities than land management. Geostatistical analysis of nematode distributions revealed both taxon-specific and field-specific patchiness. The average geostatistical range (indicating patch diameter) of 48 nematode taxa in these fields was 36 m, and related to soil organic matter. Soil organic matter content affected the spatial variance (indicating within-field variation of densities) in a life-strategy dependent manner. The r-strategists (fast-growing bacterivores and fungivores) showed a positive correlation between organic matter content and spatial variance, whereas most K-strategists (slow-growing omnivores and carnivores) showed a negative correlation. Hence, the combination of two parameters, soil organic matter content and a general life-strategy characterisation, can be used to explain the spatial distribution of nematodes at field scale

The differential impact of a native and a non-native ragwort species (Senecioneae) on the first and second trophic level of the rhizosphere food web

Whereas the impact of exotic plant species on above-ground biota is relatively well-documented, far less is known about the effects of non-indigenous plants on the first and second trophic level of the rhizosphere food web. Here, rhizosphere communities of the invasive narrow-leaved ragwort Senecio inaequidens and the native tansy ragwort Jacobaea vulgaris, co-occurring in three semi-natural habitats are compared. For both species, two life stages were taken into consideration. Quantitative PCR assays for the analyses of bacterial and fungal communities at a high taxonomic level were optimized, and it was investigated whether changes in the primary decomposer community were translated in alterations in bacterivorous and fungivorous nematode communities. In contrast to J. vulgaris, small but significant reductions were observed for Actinobacteria and Bacteroidetes (both p < 0.05) in case of the invasive S. inaequidens. More pronounced changes were detected for the overall nematode community density, and, more specifically, for the bacterivorous genus Anaplectus and the family Monhysteridae (both p < 0.05), as well as the necromenic Pristionchus (p < 0.001). At high taxonomic level, no differences were observed in fungal rhizosphere communities between native and non-native ragwort species. The impact of plant developmental stages on rhizosphere biota was prominent. The overall bacterial and fungal biomasses, as well as a remarkably consistent set of constituents (Actinobacteria, α- and β-Proteobacteria and Bacteroidetes) were negatively affected by plant stage for both ragwort species. Although later developmental stages of plants generally coincided with lower levels for individual nematode taxa, densities of the fungivorous genera Diphtherophora and Tylolaimophorus remain unaltered. Hence, even at a high taxonomic level, differential effects of native and non-native ragwort could be pinpointed. However, plant developmental stage has a more prominent impact and this impact was similar in nature for both native and non-native ragwort species

Spatial distribution of soil nematodes relates to soil organic matter and life strategy

Soils are among the most biodiverse and densely inhabited environments on our planet. However, there is little understanding of spatial distribution patterns of belowground biota, and this hampers progress in understanding species interactions in belowground communities. We investigated the spatial distribution of nematodes, which are highly abundant and diverse metazoans in most soil ecosystems. To gain insight into nematode patchiness, we mapped distribution patterns in twelve apparently homogeneous agricultural fields (100 m × 100 m each) with equal representation of three soil textures (marine clay, river clay and sandy soil). Quantitative PCRs were used to measure the abundances of 48 distinct nematode taxa in ≈1200 plots. Multivariate analysis showed that within this selection of sites, soil texture more strongly affected soil nematode communities than land management. Geostatistical analysis of nematode distributions revealed both taxon-specific and field-specific patchiness. The average geostatistical range (indicating patch diameter) of 48 nematode taxa in these fields was 36 m, and related to soil organic matter. Soil organic matter content affected the spatial variance (indicating within-field variation of densities) in a life-strategy dependent manner. The r-strategists (fast-growing bacterivores and fungivores) showed a positive correlation between organic matter content and spatial variance, whereas most K-strategists (slow-growing omnivores and carnivores) showed a negative correlation. Hence, the combination of two parameters, soil organic matter content and a general life-strategy characterisation, can be used to explain the spatial distribution of nematodes at field scale.</p

The differential impact of a native and a non-native ragwort species (Senecioneae) on the first and second trophic level of the rhizosphere food web

© 2017 Nordic Society Oikos. Whereas the impact of exotic plant species on above-ground biota is relatively well-documented, far less is known about the effects of non-indigenous plants on the first and second trophic level of the rhizosphere food web. Here, rhizosphere communities of the invasive narrow-leaved ragwort Senecio inaequidens and the native tansy ragwort Jacobaea vulgaris, co-occurring in three semi-natural habitats are compared. For both species, two life stages were taken into consideration. Quantitative PCR assays for the analyses of bacterial and fungal communities at a high taxonomic level were optimized, and it was investigated whether changes in the primary decomposer community were translated in alterations in bacterivorous and fungivorous nematode communities. In contrast to J. vulgaris, small but significant reductions were observed for Actinobacteria and Bacteroidetes (both p < 0.05) in case of the invasive S. inaequidens. More pronounced changes were detected for the overall nematode community density, and, more specifically, for the bacterivorous genus Anaplectus and the family Monhysteridae (both p < 0.05), as well as the necromenic Pristionchus (p < 0.001). At high taxonomic level, no differences were observed in fungal rhizosphere communities between native and non-native ragwort species. The impact of plant developmental stages on rhizosphere biota was prominent. The overall bacterial and fungal biomasses, as well as a remarkably consistent set of constituents (Actinobacteria, α- and β-Proteobacteria and Bacteroidetes) were negatively affected by plant stage for both ragwort species. Although later developmental stages of plants generally coincided with lower levels for individual nematode taxa, densities of the fungivorous genera Diphtherophora and Tylolaimophorus remain unaltered. Hence, even at a high taxonomic level, differential effects of native and non-native ragwort could be pinpointed. However, plant developmental stage has a more prominent impact and this impact was similar in nature for both native and non-native ragwort species

Data from: The differential impact of a native and a non-native ragwort species (Senecioneae) on the first and second trophic level of the rhizosphere food web

Whereas the impact of exotic plant species on above-ground biota is relatively well-documented, far less is known about the effects of non-indigenous plants on the first and second trophic level of the rhizosphere food web. Here, rhizosphere communities of the invasive narrow-leaved ragwort Senecio inaequidens and the native tansy ragwort Jacobaea vulgaris, co-occurring in three semi-natural habitats are compared. For both species, two life stages were taken into consideration. Quantitative PCR assays for the analyses of bacterial and fungal communities at a high taxonomic level were optimized, and it was investigated whether changes in the primary decomposer community were translated in alterations in bacterivorous and fungivorous nematode communities. In contrast to J. vulgaris, small but significant reductions were observed for Actinobacteria and Bacteroidetes (both p < 0.05) in case of the invasive S. inaequidens. More pronounced changes were detected for the overall nematode community density, and, more specifically, for the bacterivorous genus Anaplectus and the family Monhysteridae (both p < 0.05), as well as the necromenic Pristionchus (p < 0.001). At high taxonomic level, no differences were observed in fungal rhizosphere communities between native and non-native ragwort species. The impact of plant developmental stages on rhizosphere biota was prominent. The overall bacterial and fungal biomasses, as well as a remarkably consistent set of constituents (Actinobacteria, α- and β-Proteobacteria and Bacteroidetes) were negatively affected by plant stage for both ragwort species. Although later developmental stages of plants generally coincided with lower levels for individual nematode taxa, densities of the fungivorous genera Diphtherophora and Tylolaimophorus remain unaltered. Hence, even at a high taxonomic level, differential effects of native and non-native ragwort could be pinpointed. However, plant developmental stage has a more prominent impact and this impact was similar in nature for both native and non-native ragwort species

Characterization of the habitat-and season-independent increase in fungal biomass induced by the invasive giant goldenrod and its impact on the fungivorous nematode community

Outside its native range, the invasive plant species giant goldenrod (Solidago gigantea) has been shown to increase belowground fungal biomass. This non-obvious effect is poorly character-ized; we don’t know whether it is plant developmental stage-dependent, which fractions of the fungal community are affected, and whether it is reflected in the next trophic level. To address these questions, fungal assemblages in soil samples collected from invaded and uninvaded plots in two soil types were compared. Although using ergosterol as a marker for fungal biomass demonstrated a significant increase in fungal biomass, specific quantitative PCR (qPCR) assays did not point at a quantitative shift. MiSeq-based characterization of the belowground effects of giant goldenrod revealed a local increase of mainly Cladosporiaceae and Glomeraceae. This asymmetric boost in the fungal community was reflected in a specific shift in the fungivorous nematode community. Our findings provide insight into the potential impact of invasive plants on local fungal communities

Salmonella enterica Newserovar Abeokuta Genome Sequence, Strain OG19FER4 Isolated from Poultry Feed in Nigeria.

This report announces the genome of a newly confirmed Salmonella serovar (Salmonella enterica serovar Abeokuta) that was isolated from a poultry feed sample collected on a farm in Abeokuta, capital of Ogun State in Nigeria. Salmonella Abeokuta has not been identified outside Nigeria, nor does it appear to be a cause for concern for animal and human health

Converted-qPCR-Data_nematodes_bacteria_fungi

In this data file you can find the data we used to execute our statistical tests. Converted Ct values are shown and the transformed data is shown in purple. (Making use of linear relationship between primary qPCR output, Ct values, and the number of individuals, nematode concentrations expressed as individuals per 100 g of soil were calculated. As both the resulting nematode densities and the concentrations of bacterial and fungal DNA (ng per 0.25 g soil) didn’t show a normal distribution, data were transformed. Primary counts were log transformed (ln(y+0.1)). A constant (0.1) was added to push data away from the lower bound zero.) A legend is added to explain the meaning of the first six rows