Efficient Frequency Domain-based Transformers for High-Quality Image Deblurring

We present an effective and efficient method that explores the properties of Transformers in the frequency domain for high-quality image deblurring. Our method is motivated by the convolution theorem that the correlation or convolution of two signals in the spatial domain is equivalent to an element-wise product of them in the frequency domain. This inspires us to develop an efficient frequency domain-based self-attention solver (FSAS) to estimate the scaled dot-product attention by an element-wise product operation instead of the matrix multiplication in the spatial domain. In addition, we note that simply using the naive feed-forward network (FFN) in Transformers does not generate good deblurred results. To overcome this problem, we propose a simple yet effective discriminative frequency domain-based FFN (DFFN), where we introduce a gated mechanism in the FFN based on the Joint Photographic Experts Group (JPEG) compression algorithm to discriminatively determine which low- and high-frequency information of the features should be preserved for latent clear image restoration. We formulate the proposed FSAS and DFFN into an asymmetrical network based on an encoder and decoder architecture, where the FSAS is only used in the decoder module for better image deblurring. Experimental results show that the proposed method performs favorably against the state-of-the-art approaches. Code will be available at \url{https://github.com/kkkls/FFTformer}.Comment: Code will be available at \url{https://github.com/kkkls/FFTformer

Downregulation of TSPAN13 by miR-369-3p inhibits cell proliferation in papillary thyroid cancer (PTC)

Previous studies demonstrated dysregulation of different microRNAs in thyroid cancer. Tetraspanins (TSPANs) are cell surface proteins with critical roles in many cellular processes, and implications in tumor development. Here we investigated the role of miR-369-3p in papillary thyroid cancer (PTC) and its association with TSPAN13. miR-369-3p and the TSPAN13 gene expression profiles of 513 thyroid cancer and 59 normal thyroid tissues were downloaded from the Cancer Genome Atlas database. Thyroid cancer tissues were classified according to the histological type, grouped based on low and high median miR-369-3p and TSPAN13 expression, and analyzed in relation to overall survival (OS) of patients. Human PTC cell lines (TPC-1 and GLAG-66) and human embryonic kidney 293T (HEK293T) cells were used for in vitro analysis. Transfection experiments were performed with synthetic miRNA mimics for miR-369-3p and small interfering RNAs for TSPAN13. Relative expression of miR-369-3p and TSPAN13 mRNA was determined by RT-qPCR. Protein levels of TSPAN13 were determined by western blotting. Cell proliferation (CCK-8 assay), colony formation, and apoptosis (flow cytometry) were analyzed in transfected cells. Binding sites of miR-369-3p in TSPAN13 mRNA were determined by bioinformatics analysis and dual luciferase reporter assay. miR-369-3p was downregulated and TSPAN13 upregulated in PTC, follicular thyroid cancer, and tall cell variant tissues. Both low expression of miR-369-3p and high expression of TSPAN13 were associated with shorter OS in thyroid cancer patients. Overexpression of miR-369-3p significantly suppressed proliferation and promoted apoptosis in PTC cells. TSPAN13 was a direct target of miR-369-3p, and silencing of TSPAN13 phenocopied the effect of miR-369-3p mimics in PTC cells. Overall, the downregulation of miR-369-3p and consequent upregulation of its target TSPAN13 appear to be involved in pathophysiology of PTC

Anchor Retouching via Model Interaction for Robust Object Detection in Aerial Images

Object detection has made tremendous strides in computer vision. Small object detection with appearance degradation is a prominent challenge, especially for aerial observations. To collect sufficient positive/negative samples for heuristic training, most object detectors preset region anchors in order to calculate Intersection-over-Union (IoU) against the ground-truthed data. In this case, small objects are frequently abandoned or mislabeled. In this paper, we present an effective Dynamic Enhancement Anchor (DEA) network to construct a novel training sample generator. Different from the other state-of-the-art techniques, the proposed network leverages a sample discriminator to realize interactive sample screening between an anchor-based unit and an anchor-free unit to generate eligible samples. Besides, multi-task joint training with a conservative anchor-based inference scheme enhances the performance of the proposed model while reducing computational complexity. The proposed scheme supports both oriented and horizontal object detection tasks. Extensive experiments on two challenging aerial benchmarks (i.e., DOTA and HRSC2016) indicate that our method achieves state-of-the-art performance in accuracy with moderate inference speed and computational overhead for training. On DOTA, our DEA-Net which integrated with the baseline of RoI-Transformer surpasses the advanced method by 0.40% mean-Average-Precision (mAP) for oriented object detection with a weaker backbone network (ResNet-101 vs ResNet-152) and 3.08% mean-Average-Precision (mAP) for horizontal object detection with the same backbone. Besides, our DEA-Net which integrated with the baseline of ReDet achieves the state-of-the-art performance by 80.37%. On HRSC2016, it surpasses the previous best model by 1.1% using only 3 horizontal anchors

Derangement of a Factor Upstream of RARα Triggers the Repression of a Pleiotropic Epigenetic Network

Chromatin adapts and responds to extrinsic and intrinsic cues. We hypothesize that inheritable aberrant chromatin states in cancer and aging are caused by genetic/environmental factors. In previous studies we demonstrated that either genetic mutations, or loss, of retinoic acid receptor alpha (RARalpha), can impair the integration of the retinoic acid (RA) signal at the chromatin of RA-responsive genes downstream of RARalpha, and can lead to aberrant repressive chromatin states marked by epigenetic modifications. In this study we tested whether the mere interference with the availability of RA signal at RARalpha, in cells with an otherwise functional RARalpha, can also induce epigenetic repression at RA-responsive genes downstream of RARalpha.To hamper the availability of RA at RARalpha in untransformed human mammary epithelial cells, we targeted the cellular RA-binding protein 2 (CRABP2), which transports RA from the cytoplasm onto the nuclear RARs. Stable ectopic expression of a CRABP2 mutant unable to enter the nucleus, as well as stable knock down of endogenous CRABP2, led to the coordinated transcriptional repression of a few RA-responsive genes downstream of RARalpha. The chromatin at these genes acquired an exacerbated repressed state, or state "of no return". This aberrant state is unresponsive to RA, and therefore differs from the physiologically repressed, yet "poised" state, which is responsive to RA. Consistent with development of homozygosis for epigenetically repressed loci, a significant proportion of cells with a defective CRABP2-mediated RA transport developed heritable phenotypes indicative of loss of function.Derangement/lack of a critical factor necessary for RARalpha function induces epigenetic repression of a RA-regulated gene network downstream of RARalpha, with major pleiotropic biological outcomes

Study of brain network alternations in non-lesional epilepsy patients by BOLD-fMRI

ObjectiveTo investigate the changes of brain network in epilepsy patients without intracranial lesions under resting conditions.MethodsTwenty-six non-lesional epileptic patients and 42 normal controls were enrolled for BOLD-fMRI examination. The differences in brain network topological characteristics and functional network connectivity between the epilepsy group and the healthy controls were compared using graph theory analysis and independent component analysis.ResultsThe area under the curve for local efficiency was significantly lower in the epilepsy patients compared with healthy controls, while there were no differences in global indicators. Patients with epilepsy had higher functional connectivity in 4 connected components than healthy controls (orbital superior frontal gyrus and medial superior frontal gyrus, medial superior frontal gyrus and angular gyrus, superior parietal gyrus and paracentral lobule, lingual gyrus, and thalamus). In addition, functional connectivity was enhanced in the default mode network, frontoparietal network, dorsal attention network, sensorimotor network, and auditory network in the epilepsy group.ConclusionThe topological characteristics and functional connectivity of brain networks are changed in in non-lesional epilepsy patients. Abnormal functional connectivity may suggest reduced brain efficiency in epilepsy patients and also may be a compensatory response to brain function early at earlier stages of the disease

Functional Divergence among Silkworm Antimicrobial Peptide Paralogs by the Activities of Recombinant Proteins and the Induced Expression Profiles

Antimicrobial peptides are small-molecule proteins that are usually encoded by multiple-gene families. They play crucial roles in the innate immune response, but reports on the functional divergence of antimicrobial peptide gene families are rare. In this study, 14 paralogs of antimicrobial peptides belonging to cecropin, moricin and gloverin families were recombinantly expressed in pET expression systems. By antimicrobial activity tests, peptides representing paralogs in the same family of cecropin and moricin families, displayed remarkable differences against 10 tested bacteria. The evolutionary rates were relatively fast in the two families, which presented obvious functional divergence among paralogs of each family. Four peptides of gloverin family had similar antimicrobial spectrum and activity against tested bacteria. The gloverin family showed similar antimicrobial function and slow evolutionary rates. By induced transcriptional activity, genes encoding active antimicrobial peptides were upregulated at obviously different levels when silkworm pupae were infected by three types of microbes. Association analysis of antimicrobial activities and induced transcriptional activities indicated that the antimicrobial activities might be positively correlated with induced transcriptional activities in the cecropin and moricin families. These results suggest that representative BmcecB6, BmcecD and Bmmor as the major effector genes have broad antimicrobial spectrum, strong antimicrobial activity and high microbe-induced expression among each family and maybe play crucial roles in eliminating microbial infection

Two new genera and three new species of Epipaschiinae Meyrick from China (Lepidoptera, Pyralidae)

Two new genera of Epipaschiinae are described. The genus Arcanusa Wang, Chen & Wu, gen. n. is established for Ar. apexiarcanusa Wang, Chen & Wu, sp. n. and Ar. sinuosa (Moore, 1888), comb. n., described in Scopocera Moore, 1888 (junior synonym of Stericta Lederer, 1863). The female genitalia of Ar. sinuosa (Moore, 1888), comb. n. are described for the first time. Androconia Wang, Chen & Wu, gen. n. is erected, including two new species, An. rallusa Wang, Chen & Wu, sp. n. and An. morulusa Wang, Chen & Wu, sp. n. Illustrations of all adults and their genitalia, and a key to the two new genera are provided