Cochlearia polonica Fröhl. (Brassicaceae), a narrow endemic species of southern Poland: history of conservation efforts, overview of current population resources and genetic structure of populations

Cochlearia polonica Fröhl. (Brassicaceae) is one of the rarest species in the Polish and European flora and a taxon endemic to a very small area in southern Poland. Due to industrial activities and subsequent transformation of habitats it was extinct in all natural localities around 1994. The persistence of the species was ensured thanks to the active protection efforts including a series of transplantations based on the material from the last and decreasing natural population. The history of conservation efforts of C. polonica provides a model example of successful active protection in the European flora. Here, we provide a complete review comprising the following aims: (i) outline of the discovery and taxonomic conceptions on C. polonica, (ii) review of conservation efforts aimed at preserving its populations, (iii) description of the existing population resources, and (iv) analysis of the genetic structure of all existing populations based on previously published data and new, supplementary results

Two additions to the moss flora of the South Shetland Islands in the maritime Antarctic

Tortella fragilis (Drumm.) Limpr. (Pottiaceae) and Bryum nivale Müll. Hal. (Bryaceae) are recorded for the first time from the South Shetland Islands in the northern maritime Antarctic. They were discovered in the Admiralty Bay area on King George Island, the largest island of this archipelago. The two species are briefly characterized morphologically, their habitats are described, and their distribution in the Antarctic is mapped. Discovery of these species has increased the documented moss flora of King George Island to 67 species, strengthening it in the leading position among individual areas with the richest diversity of moss flora in Antarctica. Likewise, T. fragilis and B. nivale represent remarkable additions to the moss flora of the South Shetland Islands, which currently consists of 92 species and one variety, making this archipelago by far the richest bryofloristically amongst large geographic regions of the Antarctic. Comparison of recent (2018) and old (1985) photographs revealed a significant retreat of glacial cover and suggests that the collection site was likely opened for colonization only within the last several decades. The record of T. fragilis is biogeographically relevant, and constitutes an intermediate site between the species’ occurrences in the Antarctic Peninsula and southern South America. The present record of B. nivale is the fourth discovery of the species worldwide, which may be helpful for the future designation of the distribution of this extremely rare species

First record of Exobasidium rhododendri (Fuckel) C. E. Cramer in Poland

We report here the first wild locality of Exobasidium rhododendri (Fuckel) C. E. Cramer in Poland. This peculiar species is an obligatory pathogenic basidiomycete, which induces formation of galls on leaves of Rhododendron. It was found for the first time in Poland in 2017 on Rhododendron ferrugineum L. plants in a population of this shrub in the Karkonosze Mts (the Sudetes range). The species was recently shown to be native and a relict. We also present a basic description of the species based on the specimens from the abovementioned locality

Micropropagation of Viola uliginosa (Violaceae) for endangered species conservation and for somaclonal variation-enhanced cyclotide biosynthesis

Viola uliginosa Besser is a European violet having its main distribution range in the Baltic Sea region. Today it is considered endangered and threatened. Species of Violaceae from different genera and sections are known to produce cyclotides, cyclic polypeptides of much interest due to their medicinal properties and chemical structure. The present study introduced a rare species of violet (V. uliginosa) to in vitro culture for biodiversity protection and as a model for cyclotide biosynthesis research in the Violaceae. Leaf and petiole fragments were cultured on MS medium solidified with agar and supplemented with different concentrations of plant growth regulators: TDZ, KIN and 2,4-D. Direct and indirect (via callus) organogenesis was induced on MS supplemented with TDZ (0.5 or 1 mg l−1) or with equal concentrations (2 mg l−1) of KIN and 2,4-D, followed by callus transfer on 1 mg l−1 TDZ. Shoots were rooted on MS with 2 % sucrose and 0.5 mg l−1 IBA and acclimatized. AFLP marker polymorphism was low but flow cytometry revealed that a large share of the obtained regenerants were tetraploid (2C = 4x = 2.7–2.8 pg), unlike the maternal diploid plants (2C = 2x = 1.4 pg). Eleven different cyclotides were distinguished in the aerial parts of maternal plants. Cyclotide production was significantly higher in tetraploid than in diploid plants regenerated in vitro

Climate Change and Alpine Screes: No Future for Glacial Relict Papaver occidentale (Papaveraceae) in Western Prealps

Glacial relicts, especially those with very narrow habitat requirements, are particularly affected by global warming. We considered Papaver occidentale, a glacial relict endemic to the Western Prealps, belonging to the alpine poppy complex (P. alpinum aggr.), as a model taxon to study the actual status and potential future distribution of species restricted to particular microrefugia. For this study, all known localities were visited, each population was georeferenced and the number of individuals was estimated. Species Distribution Modelling (SDM) was used to evaluate the present and future potential distribution range and habitat suitability, taking into account the specificity of its habitat (calcareous screes). According to our study, there are globally 19 natural populations of P. occidentale, and a total of about 30,000 individuals. The taxon is a highly specialized alpine plant growing in the majority of natural sites between 1900 and 2100 m a.s.l. on north-facing screes. Predictions for the end of the 21st century indicate that a suitable area will significantly decrease (0–30% remaining). Under the most severe climatic scenarios (RCP 8.5), the species risks complete extinction. The long-term in situ conservation of P. occidentale, and all other taxa of the P. alpinum complex, is unlikely to be achieved without slowing global climate change. More generally, our fine-scale study shows that local environmental buffering of large-scale climate change in high-mountain flora may be very limited in specialised taxa of patchy environments such as screes

Assessing the potential of RAD-sequencing to resolve phylogenetic relationships within species radiations: The fly genus Chiastocheta (Diptera: Anthomyiidae) as a case study

Determining phylogenetic relationships among recently diverged species has long been a challenge in evolutionary biology. Cytoplasmic DNA markers, which have been widely used, notably in the context of molecular barcoding, have not always proved successful in resolving such phylogenies. However, with the advent of next-generation-sequencing technologies and associated techniques of reduced genome representation, phylogenies of closely related species have been resolved at a much higher detail in the last couple of years. Here we examine the potential and limitations of one of such techniques—Restriction-site Associated DNA (RAD) sequencing, a method that produces thousands of (mostly) anonymous nuclear markers, in disentangling the phylogeny of the fly genus Chiastocheta (Diptera: Anthomyiidae). In Europe, this genus encompasses seven species of seed predators, which have been widely studied in the context of their ecological and evolutionary interactions with the plant Trollius europaeus (Ranunculaceae). So far, phylogenetic analyses using mitochondrial markers failed to resolve monophyly of most of the species from this recently diversified genus, suggesting that their taxonomy may need a revision. However, relying on a single, non-recombining marker and ignoring potential incongruences between mitochondrial and nuclear loci may provide an incomplete account of the lineage history. In this study, we applied both classical Sanger sequencing of three mtDNA regions and RAD-sequencing, for reconstructing the phylogeny of the genus. Contrasting with results based on mitochondrial markers, RAD-sequencing analyses retrieved the monophyly of all seven species, in agreement with the morphological species assignment. We found robust nuclear-based species assignment of individual samples, and low levels of estimated contemporary gene flow among them. However, despite recovering species’ monophyly, interspecific relationships varied depending on the set of RAD loci considered, producing contradictory topologies. Moreover, coalescence-based phylogenetic analyses revealed low supports for most of the interspecific relationships. Our results indicate that despite the higher performance of RAD-sequencing in terms of species trees resolution compared to cytoplasmic markers, reconstructing inter-specific relationships among recently-diverged lineages may lie beyond the possibilities offered by large sets of RAD-sequencing markers in cases of strong gene tree incongruence

Multilocus DNA analysis supports Didymodon gelidus (Musci, Pottiaceae) as a distinct endemic of the austral polar region

The taxonomic position of the Antarctic subendemic species Didymodon gelidus Cardot is controversial, notably because of its notorious sterile condition. Considering the overall appearance and the reddish coloration of the plants, the leaf areolation, reaction of the leaf lamina with KOH, and the presence of multicellular axillary gemmae, this species was considered to be conspecific with the Holarctic D. brachyphyllus (Sull.) R. H. Zander. As a result, the latter was established as a bipolar species. Recent detailed morphological and anatomical studies have revealed a number of features which enable recognition of D. gelidus and D. brachyphyllus, including the shape of leaves, leaf apices and basal leaf cells, as well as costal anatomy. Here, within a larger-scale project focused on the evolution and biogeographical connections of Antarctic endemic mosses, we analyzed the genetic relationships of D. gelidus and D. brachyphyllus to confront the morphology-based conclusions. We selected five geographically distinct collections per species and applied a multilocus DNA analysis based on nuclear (ITS) and plastid (atpIH, trnLF, trnG, rps4) sequences to assess the genetic differentiation of these two taxa. We also placed their lineages in a wider phylogenetic context using an extended sampling of Didymodon taxa and select other representatives of Pottiaceae. Our results showed a clear genetic differentiation of the Southern Hemisphere (D. gelidus) and Northern Hemisphere (D. brachyphyllus) plants. Moreover, the phylogenetic analysis showed that D. gelidus formed a strongly supported clade on its own which was distantly related to D. brachyphyllus. Accordingly, the two taxa do not represent geographical vicariants. Didymodon gelidus must be considered a distinct endemic species of the austral polar region, having its optimal occurrence in the Antarctic and weakly penetrating northward to South Georgia and Îles Kerguelen in the Subantarctic. The relatively isolated phylogenetic position of D. gelidus likely suggests its old age