Linear and Nonlinear Optical Properties of Graphene Quantum Dots: A Computational Study

Due to the advantage of tunability via size, shape, doping and relatively low level of loss and high extent of spatial confinement, graphene quantum dots (GQDs) are emerging as an effective way to control light by molecular engineering. The collective excitation in GQDs shows both high energy plasmon frequency along with frequencies in the terahertz (THz) region making these systems powerful materials for photonic technologies. Here, we report a systematic study of the linear and nonlinear optical properties of large varieties of GQDs (400 systems) in size and topology utilizing the strengths of both semiempirical and first-principles methods. Our detailed study shows how the spectral shift and trends in the optical nonlinearity of GQDs depends on their structure, size and shape. Among the circular, triangular, stripe, and random shaped GQDs, we find that GQDs with inequivalent sublattice atoms always possess lower HOMO-LUMO gap, broadband absorption and high nonlinear optical coefficients. Also, we find that for majority of the GQDs with interesting linear and nonlinear optical properties have zigzag edges, although reverse is not always true. We strongly believe that our findings can act as guidelines to design GQDs in optical parametric oscillators, higher harmonic generators and optical modulators.Comment: 21 pages, 11 figures, 4 table

Mutations in the Catalytic Loop HRD Motif Alter the Activity and Function of Drosophila Src64

The catalytic loop HRD motif is found in most protein kinases and these amino acids are predicted to perform functions in catalysis, transition to, and stabilization of the active conformation of the kinase domain. We have identified mutations in a Drosophila src gene, src64, that alter the three HRD amino acids. We have analyzed the mutants for both biochemical activity and biological function during development. Mutation of the aspartate to asparagine eliminates biological function in cytoskeletal processes and severely reduces fertility, supporting the amino acid's critical role in enzymatic activity. The arginine to cysteine mutation has little to no effect on kinase activity or cytoskeletal reorganization, suggesting that the HRD arginine may not be critical for coordinating phosphotyrosine in the active conformation. The histidine to leucine mutant retains some kinase activity and biological function, suggesting that this amino acid may have a biochemical function in the active kinase that is independent of its side chain hydrogen bonding interactions in the active site. We also describe the phenotypic effects of other mutations in the SH2 and tyrosine kinase domains of src64, and we compare them to the phenotypic effects of the src64 null allele

Combination of alpha-melanocyte stimulating hormone with conventional antibiotics against methicillin resistant Staphylococcus aureus.

Our previous studies revealed that alpha-melanocyte stimulating hormone (α-MSH) is strongly active against Staphylococcus aureus (S. aureus) including methicillin resistant S. aureus (MRSA). Killing due to α-MSH occurred by perturbation of the bacterial membrane. In the present study, we investigated the in vitro synergistic potential of α-MSH with five selected conventional antibiotics viz., oxacillin (OX), ciprofloxacin (CF), tetracycline (TC), gentamicin (GM) and rifampicin (RF) against a clinical MRSA strain which carried a type III staphylococcal cassette chromosome mec (SCCmec) element and belonged to the sequence type (ST) 239. The strain was found to be highly resistant to OX (minimum inhibitory concentration (MIC) = 1024 µg/ml) as well as to other selected antimicrobial agents including α-MSH. The possibility of the existence of intracellular target sites of α-MSH was evaluated by examining the DNA, RNA and protein synthesis pathways. We observed a synergistic potential of α-MSH with GM, CF and TC. Remarkably, the supplementation of α-MSH with GM, CF and TC resulted in ≥ 64-, 8- and 4-fold reductions in their minimum bactericidal concentrations (MBCs), respectively. Apart from membrane perturbation, in this study we found that α-MSH inhibited ≈ 53% and ≈ 47% DNA and protein synthesis, respectively, but not RNA synthesis. Thus, the mechanistic analogy between α-MSH and CF or GM or TC appears to be the reason for the observed synergy between them. In contrast, α-MSH did not act synergistically with RF which may be due to its inability to inhibit RNA synthesis (<10%). Nevertheless, the combination of α-MSH with RF and OX showed an enhanced killing by ≈ 45% and ≈ 70%, respectively, perhaps due to the membrane disrupting properties of α-MSH. The synergistic activity of α-MSH with antibiotics is encouraging, and promises to restore the lost potency of discarded antibiotics

Bactericidal activity of curcumin I is associated with damaging of bacterial membrane.

Curcumin, an important constituent of turmeric, is known for various biological activities, primarily due to its antioxidant mechanism. The present study focused on the antibacterial activity of curcumin I, a significant component of commercial curcumin, against four genera of bacteria, including those that are Gram-positive (Staphylococcus aureus and Enterococcus faecalis) and Gram-negative (Escherichia coli and Pseudomonas aeruginosa). These represent prominent human pathogens, particularly in hospital settings. Our study shows the strong antibacterial potential of curcumin I against all the tested bacteria from Gram-positive as well as Gram-negative groups. The integrity of the bacterial membrane was checked using two differential permeabilization indicating fluorescent probes, namely, propidium iodide and calcein. Both the membrane permeabilization assays confirmed membrane leakage in Gram-negative and Gram-positive bacteria on exposure to curcumin I. In addition, scanning electron microscopy and fluorescence microscopy were employed to confirm the membrane damages in bacterial cells on exposure to curcumin I. The present study confirms the broad-spectrum antibacterial nature of curcumin I, and its membrane damaging property. Findings from this study could provide impetus for further research on curcumin I regarding its antibiotic potential against rapidly emerging bacterial pathogens

Spectral signatures of intramolecular charge transfer process in beta-enaminones: a combined experimental and theoretical analysis

In this paper, we present spectroscopic signatures of intramolecular charge transfer (ICT) and effects of solvent on the ICT process in 3-(phenylamino)-2-cyclohexen-1-one (PACO), a member of the well-known molecular family, the beta-enaminones. The dual fluorescence in the steady state emission spectra of the molecule in polar solvents indicates the occurrence of ICT, which is further supported by time-resolved studies, using time correlated single photon counting technique with picosecond resolution. To understand the nature of the charge transfer, pH dependent studies of the probe in water were performed, where a quenching of fluorescence was observed even in the presence of very low concentrations of acids. Solvent induced fluorescence quenching was observed in ethanol and methanol. The ICT process was also investigated by quantum chemical calculations. To understand the role of solvents in the ICT process, we have theoretically studied the macroscopic and microscopic solvation of the probe in water. The absorption spectra of the molecule in the gas phase as well as in water were simulated using time dependent density functional theory with cc-pVTZ basis set and selfconsistent reaction field theory that models macroscopic solvation. The possibility of microscopic solvation in water was probed theoretically and the formation of 1:3 molecular clusters by PACO with water molecules has been confirmed. Our findings could have a bearing on pH sensing applications of the probe

Rabi type oscillations in damped two-dimensional single electron quantum dots

We present a quantized model of a harmonically confined dot atom with inherent damping in the presence of a transverse magnetic field. The model leads to a non-Hermitian Hamiltonian in coordinate space. We have analytically studied the effects of damping on Rabi type oscillations of the system. The model explains the decoherence of Rabi oscillations in a Josephson Junction