33 research outputs found

    Evaluation of cell-free DNA approaches for multi-cancer early detection

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    In the Circulating Cell-free Genome Atlas (NCT02889978) substudy 1, we evaluate several approaches for a circulating cell-free DNA (cfDNA)-based multi-cancer early detection (MCED) test by defining clinical limit of detection (LOD) based on circulating tumor allele fraction (cTAF), enabling performance comparisons. Among 10 machine-learning classifiers trained on the same samples and independently validated, when evaluated at 98% specificity, those using whole-genome (WG) methylation, single nucleotide variants with paired white blood cell background removal, and combined scores from classifiers evaluated in this study show the highest cancer signal detection sensitivities. Compared with clinical stage and tumor type, cTAF is a more significant predictor of classifier performance and may more closely reflect tumor biology. Clinical LODs mirror relative sensitivities for all approaches. The WG methylation feature best predicts cancer signal origin. WG methylation is the most promising technology for MCED and informs development of a targeted methylation MCED test

    South Asian Immigration to United States: A Brief History Within the Context of Race, Politics, and Identity

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    In this chapter we focus on key themes that impact South Asian diasporic communities in general. First, we briefly chart the South Asian immigrant journeys to the U.S. from the late 1800s through the watershed mid-century immigration policies to contemporary times. Second, we examine the contradictions between the model minority discourses that are sustained within the South Asian diaspora and the racism and discrimination experienced by South Asian immigrants particularly in the context of post 9/11 America. Finally, we conclude by looking at some of the ways in which first, second, and subsequent generations in the South Asian diaspora have creatively and politically engaged with their identity
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