Veterinary aid clinic assessments of working ponies in West Nusa Tenggara province, Indonesia: A retrospective study

Working ponies in the West Nusa Tenggara (NTB) province of Indonesia are relied upon as the principal mode of transport. They have important cultural, logistical and One Health significance for the local community. Given the tropical climate, these ponies face well recognised health and welfare challenges . Parameters relating to the general health and welfare of the ponies were assessed following data analysis of clinical records from three veterinary clinics held in 2018 and 2019. Records relating to 454 clinical examinations of ponies (n=365 stallions) aged between 1 to 25 years (mean 7.59 ± 4.70) were analysed. The mean body condition score (1 to 5 scoring system) across all clinics was 2.89 (±0.49; range 1.5, 4.5), with no significant difference between clinics (P= 0.297). The majority of ponies (84.57%; 95% CI 80.50, 87.92; 307/363) assessed presented with tachypnoea, 37.24% presented with tachycardia (95% CI 32.78, 41.92; 159/427), 14.80% (95% CI 11.10, 19.46; 41/277) recorded rectal temperatures considered hyperthermic (>38.5°C), and 38.0% did not show obvious evidence of sweating (95% CI 32.21, 44.16; 95/250). Ponies examined at the April/May 2019 clinic were more likely to be considered hyperthermic (P=0.009) and/or presented with tachycardia (P<0.001), whereas ponies examined in the November 2019 clinic were more likely to present with tachypnoea (P=0.001). In general, the objective measures of body condition and health indices of these ponies were considered adequate. Some abnormalities relating to prolonged recovery following exercise whilst working were considered likely related to thermoregulatory stress. Parasite burdens were found to be low, no haemoprotozoan parasites were detected and median faecal egg count was zero. Measures to encourage cooling and greater frequent rest periods continued surveillance and monitoring the health of these ponies will result in both enhanced welfare and advances in One Health initiatives

Search for Branons at LEP

We search, in the context of extra-dimension scenarios, for the possible existence of brane fluctuations, called branons. Events with a single photon or a single Z-boson and missing energy and momentum collected with the L3 detector in e^+ e^- collisions at centre-of-mass energies sqrt{s}=189-209$ GeV are analysed. No excess over the Standard Model expectations is found and a lower limit at 95% confidence level of 103 GeV is derived for the mass of branons, for a scenario with small brane tensions. Alternatively, under the assumption of a light branon, brane tensions below 180 GeV are excluded

Globetrotting strangles: the unbridled national and international transmission of Streptococcus equi between horses.

The equine disease strangles, which is characterized by the formation of abscesses in the lymph nodes of the head and neck, is one of the most frequently diagnosed infectious diseases of horses around the world. The causal agent, Streptococcus equi subspecies equi, establishes a persistent infection in approximately 10 % of animals that recover from the acute disease. Such 'carrier' animals appear healthy and are rarely identified during routine veterinary examinations pre-purchase or transit, but can transmit S. equi to naïve animals initiating new episodes of disease. Here, we report the analysis and visualization of phylogenomic and epidemiological data for 670 isolates of S. equi recovered from 19 different countries using a new core-genome multilocus sequence typing (cgMLST) web bioresource. Genetic relationships among all 670 S. equi isolates were determined at high resolution, revealing national and international transmission events that drive this endemic disease in horse populations throughout the world. Our data argue for the recognition of the international importance of strangles by the Office International des Épizooties to highlight the health, welfare and economic cost of this disease. The Pathogenwatch cgMLST web bioresource described herein is available for tailored genomic analysis of populations of S. equi and its close relative S. equi subspecies zooepidemicus that are recovered from horses and other animals, including humans, throughout the world. This article contains data hosted by Microreact

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

Prevalence and Factors Associated with Working Equid Lameness in Low- and Middle-Income Countries: A Systematic Review and Meta-Analysis

Lameness is an important concern in working equids of low- and middle-income communities (LMICs) with significant One Welfare implications. This study aims to determine the prevalence and influencing factors of lameness in working equids of LMICs. A systematic review and meta-analysis were performed to investigate pooled outcome prevalence using a random intercept regression model. Subgroup and sensitivity analysis were performed through meta-regression. A meta-analysis of study factors for lameness prevalence was performed. Sixty-four studies were included in the review. The pooled prevalence of lameness was 29.9% (n = 42, 95% CI 17–47%), while the pooled prevalence of gait abnormality was 62.9% (n = 12; 95% CI 31–87%). When considering both outcomes together, the pooled prevalence was 38.4% (n = 46; 95% CI 23–57%) with a significant (p = 0.02) difference between lameness (29.5%; 95% CI 16–48%) and gait abnormality (78.8%; 95% CI 40–95%). Species, country income level, gait assessed, and risk of bias did not significantly affect the pooled prevalence. Lower body condition scores, unresponsive attitudes, and old age were the most frequently reported factors positively associated with lameness-related outcomes. Working 7 days per week was positively associated with lameness. The standardization of outcome terminology, grading systems, and study factor categorization is recommended to enable more accurate interpretation and comparison between studies

Additional file 2 of Whole genome sequence analysis of equid gammaherpesvirus -2 field isolates reveals high levels of genomic diversity and recombination

Additional file 2: Table S1. Summary of sequencing metrics and assembly for EHV2 isolates. Table S2. Percentage nucleotide identity between EHV2 isolates. Table S3. Analysis of the overall selective pressure acting on EHV2 genes. Calculations of non-synonymous substitutions per non-synonymous site (Ka) to synonymous substitution per synonymous site (Ks) ratios for all EHV2 genes, along with standard errors based on 1,000 bootstrap replicates. Table S4. Details of the genes included in the study and their accession numbers. Table S5. Recombination breakpoint analysis of 20 EHV2 strains including strains 86/67 and G9/92

Minority Ethnic Media as Communities of Practice: Professionalism and Identity Politics in Interaction.

NoThis paper examines the current circumstances of minority ethnic media production. It particularly addresses the tensions that may exist for minority ethnic media workers between their commitment to a professional identity and status, and their negotiation of their own ethnic identity. Through employing a specific model of communities of practice this paper provides an analytic frame which illuminates some of the challenges which may be particularly present in the institutional dynamics and identity politics operating within minority ethnic media enterprises. In noting the synergy between the minority ethnic media activities and the media systems of the dominant ethnic communities this paper argues for a recognition of the role of minority ethnic media in shaping a vigorous public sphere, and advocates a more extensive commitment of research resources to the analysis of their role in the multi-ethnic nation-state and transnationally