150 research outputs found

    MUSIED: A Benchmark for Event Detection from Multi-Source Heterogeneous Informal Texts

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    Event detection (ED) identifies and classifies event triggers from unstructured texts, serving as a fundamental task for information extraction. Despite the remarkable progress achieved in the past several years, most research efforts focus on detecting events from formal texts (e.g., news articles, Wikipedia documents, financial announcements). Moreover, the texts in each dataset are either from a single source or multiple yet relatively homogeneous sources. With massive amounts of user-generated text accumulating on the Web and inside enterprises, identifying meaningful events in these informal texts, usually from multiple heterogeneous sources, has become a problem of significant practical value. As a pioneering exploration that expands event detection to the scenarios involving informal and heterogeneous texts, we propose a new large-scale Chinese event detection dataset based on user reviews, text conversations, and phone conversations in a leading e-commerce platform for food service. We carefully investigate the proposed dataset's textual informality and multi-source heterogeneity characteristics by inspecting data samples quantitatively and qualitatively. Extensive experiments with state-of-the-art event detection methods verify the unique challenges posed by these characteristics, indicating that multi-source informal event detection remains an open problem and requires further efforts. Our benchmark and code are released at \url{https://github.com/myeclipse/MUSIED}.Comment: Accepted at EMNLP 202

    A genome-wide association study explores the genetic determinism of host resistance to Salmonella pullorum infection in chickens

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    International audienceAbstractBackgroundSalmonella infection is a serious concern in poultry farming because of its impact on both economic loss and human health. Chicks aged 20Ā days or less are extremely vulnerable to Salmonella pullorum (SP), which causes high mortality. Furthermore, an outbreak of SP infection can result in a considerable number of carriers that become potential transmitters, thus, threatening fellow chickens and offspring. In this study, we conducted a genome-wide association study (GWAS) to detect potential genomic loci and candidate genes associated with two disease-related traits: death and carrier state.MethodsIn total, 818 birds were phenotyped for death and carrier state traits through a SP challenge experiment, and genotyped by using a 600Ā K high-density single nucleotide polymorphism (SNP) array. A GWAS using a single-marker linear mixed model was performed with the GEMMA software. RNA-sequencing on spleen samples was carried out for further identification of candidate genes.ResultsWe detected a region that was located between 33.48 and 34.03Ā Mb on chicken chromosome 4 and was significantly associated with death, with the most significant SNP (rs314483802) accounting for 11.73% of the phenotypic variation. Two candidate genes, FBXW7 and LRBA, were identified as the most promising genes involved in resistance to SP. The expression levels of FBXW7 and LRBA were significantly downregulated after SP infection, which suggests that they may have a role in controlling SP infections. Two other significant loci and related genes (TRAF3 and gga-mir-489) were associated with carrier state, which indicates a different polygenic determinism compared with that of death. In addition, genomic inbreeding coefficients showed no correlation with resistance to SP within each breed in our study.ConclusionsThe results of this GWAS with a carefully organized Salmonella challenge experiment represent an important milestone in understanding the genetics of infectious disease resistance, offer a theoretical basis for breeding SP-resistant chicken lines using marker-assisted selection, and provide new information for salmonellosis research in humans and other animals

    Physical Model Test on the Deformation Mechanism of Reservoir Bank Slopes With Sand Layers Under Coupled Hydro-Mechanical Conditions

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    A reservoir area is mostly located in the canyon area, and the geological structure is complex. There are a large number of unstable slopes on the bank of the reservoir. The stability of bank slope is greatly affected by water storage and reservoir water regulation. In addition, sudden rainstorm and other external factors can reduce slope stability. In this article, the physical model test is used to study the seepage field and deformation characteristics of typical reservoir bank slopes with sand layers under different rainfall intensities, different water level fluctuation rates, and their coupling effects. The model has a length of 4.0Ā m, a width of 1.0Ā m, and a height of 0.9Ā m, and the piezometers and white balls are used to monitor the pore water pressures and displacements inside the slope model individually. The results show that the responsiveness of pore water pressure inside the slope lags behind both water level fluctuation and rainfall. The lag time is inversely proportional to the water level fluctuation rates under the single water level fluctuation condition, while it is proportional to water level fluctuation rates in the water level decline stage under the coupling effect condition. The rapid impoundment of the reservoir area has a strengthening effect on the stability of the reservoir bank slope. However, accelerated deformation of the slope occurs in the stage of water level decline, and the deformation rate is proportional to the water level fluctuation rates

    Effects of treatment with Astragalus Membranaceus on function of rat leydig cells

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    Background Astragalus membranaceus (AM) is a Chinese traditional herb which has been reported to have broad positive effects on many diseases, including hepatitis, heart disease, diabetes and skin disease. AM can promote cell proliferation, increase the activities of superoxide dismutase (SOD) and glutathione peroxidase (GPx), and inhibit apoptosis by regulating the transcription of proto-oncogenes controlling cell death. While AM is included in some commercially available ā€œtestosterone boosting supplementsā€, studies directly testing ability of AM to modulate testosterone production are lacking. In the present study, we examined the effects of AM on Leydig cell function in vitro. Methods Rat Leydig cells were purified and treated with AM at different concentrations (0 Ī¼g/mL, 10 Ī¼g/mL, 20 Ī¼g/mL, 50 Ī¼g/mL, 100 Ī¼g/mL and 150 Ī¼g/mL) and cell counting-8 (CCK-8) assay, Enzyme-linked immunosorbent assay, quantitative real time PCR and analysis of activities of SOD and GPx were done respectively. Results Treatment with 100 Ī¼g/mL (Pā€‰\u3cā€‰0.05) and 150 Ī¼g/mL AM (Pā€‰\u3cā€‰0.01) significantly increased Leydig cell numbers. Treatment with AM (20 Ī¼g/mL, 50 Ī¼g/mL and 100 Ī¼g/mL) significantly increased testosterone production (Pā€‰\u3cā€‰0.01). In addition, increased Leydig cell SOD and GPx activities were observed in response to 20 Ī¼g/mL and 50 Ī¼g/mL AM treatment (Pā€‰\u3cā€‰0.01). Furthermore, expression of Bax mRNA was significantly decreased (Pā€‰\u3cā€‰0.01), and the ratio of Bcl-2/Bax mRNA was significantly increased in response to 20 Ī¼g/mL AM in the culture medium (Pā€‰\u3cā€‰0.05). Conclusions Results supported a beneficial effect of AM on multiple aspects of rat Leydig cell function in vitro including testosterone production

    Identification of a novel MYC target gene set signature for predicting the prognosis of osteosarcoma patients

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    Osteosarcoma is a primary malignant tumor found mainly in teenagers and young adults. Patients have very little long-term survival. MYC controls tumor initiation and progression by regulating the expression of its target genes; thus, constructing a risk signature of osteosarcoma MYC target gene set will benefit the evaluation of both treatment and prognosis. In this paper, we used GEO data to download the ChIP-seq data of MYC to obtain the MYC target gene. Then, a risk signature consisting of 10 MYC target genes was developed using Cox regression analysis. The signature indicates that patients in the high-risk group performed poorly. After that, we verified it in the GSE21257 dataset. In addition, the difference in tumor immune function among the low- and high-risk populations was compared by single sample gene enrichment analysis. Immunotherapy and prediction of response to the anticancer drug have shown that the risk signature of the MYC target gene set was positively correlated with immune checkpoint response and drug sensitivity. Functional analysis has demonstrated that these genes are enriched in malignant tumors. Finally, STX10 was selected for functional experimentation. STX10 silence has limited osteosarcoma cell migration, invasion, and proliferation. Therefore, these findings indicated that the MYC target gene set risk signature could be used as a potential therapeutic target and prognostic indicator in patients with osteosarcoma

    Predictive value of 8-year blood pressure measures in intracerebral haemorrhage risk over 5 years

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    Aims The relationships between long-term blood pressure (BP) measures and intracerebral haemorrhage (ICH), as well as their predictive ability on ICH, are unclear. In this study, we aim to investigate the independent associations of multiple BP measures with subsequent 5-year ICH risk, as well as the incremental value of these measures over a single-point BP measurement in ICH risk prediction. Methods and results We included 12 398 participants from the China Kadoorie Biobank (CKB) who completed three surveys every 4ā€“5 years. The following long-term BP measures were calculated: mean, minimum, maximum, standard deviation, coefficient of variation, average real variability, and cumulative BP exposure (cumBP). Cox proportional hazard models were used to examine the associations between these measures and ICH. The potential incremental value of these measures in ICH risk prediction was assessed using Harrellā€™s C statistics, continuous net reclassification improvement (cNRI), and relative integrated discrimination improvement (rIDI). The hazard ratios (95% confidence intervals) of incident ICH associated with per standard deviation increase in cumulative systolic BP and cumulative diastolic BP were 1.62 (1.25ā€“2.10) and 1.59 (1.23ā€“2.07), respectively. When cumBP was added to the conventional 5-year ICH risk prediction model, the C-statistic change was 0.009 (āˆ’0.001, 0.019), the cNRI was 0.267 (0.070ā€“0.464), and the rIDI was 18.2% (5.8ā€“30.7%). Further subgroup analyses revealed a consistent increase in cNRI and rIDI in men, rural residents, and participants without diabetes. Other long-term BP measures showed no statistically significant associations with incident ICH and generally did not improve model performance. Conclusion The nearly 10-year cumBP was positively associated with an increased 5-year risk of ICH and could significantly improve risk reclassification for the ICH risk prediction model that included single-point BP measurement
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