2 research outputs found
<i>O</i>‑Acetyl Side-Chains in Monosaccharides: Redundant NMR Spin-Couplings and Statistical Models for Acetate Ester Conformational Analysis
α-
and β-d-glucopyranose monoacetates <b>1</b>–<b>3</b> were prepared with selective <sup>13</sup>C enrichment in
the <i>O</i>-acetyl side-chain,
and ensembles of <sup>13</sup>C–<sup>1</sup>H and <sup>13</sup>C–<sup>13</sup>C NMR spin-couplings (<i>J</i>-couplings)
were measured involving the labeled carbons. Density functional theory
(DFT) was applied to a set of model structures to determine which <i>J</i>-couplings are sensitive to rotation of the ester bond
θ. Eight <i>J</i>-couplings (<sup>1</sup><i>J</i><sub>CC</sub>, <sup>2</sup><i>J</i><sub>CH</sub>, <sup>2</sup><i>J</i><sub>CC</sub>, <sup>3</sup><i>J</i><sub>CH</sub>, and <sup>3</sup><i>J</i><sub>CC</sub>) were
found to be sensitive to θ, and four equations were parametrized
to allow quantitative interpretations of experimental <i>J</i>-values. Inspection of <i>J</i>-coupling ensembles in <b>1</b>–<b>3</b> showed that <i>O</i>-acetyl
side-chain conformation depends on molecular context, with flanking
groups playing a dominant role in determining the properties of θ
in solution. To quantify these effects, ensembles of <i>J</i>-couplings containing four values were used to determine the precision
and accuracy of several 2-parameter statistical models of rotamer
distributions across θ in <b>1</b>–<b>3</b>. The statistical method used to generate these models has been encoded
in a newly developed program, MA′AT, which is available for
public use. These models were compared to <i>O</i>-acetyl
side-chain behavior observed in a representative sample of crystal
structures, and in molecular dynamics (MD) simulations of <i>O</i>-acetylated model structures. While the functional form
of the model had little effect on the precision of the calculated
mean of θ in <b>1</b>–<b>3</b>, platykurtic
models were found to give more precise estimates of the width of the
distribution about the mean (expressed as circular standard deviations).
Validation of these 2-parameter models to interpret ensembles of redundant <i>J</i>-couplings using the <i>O</i>-acetyl system as
a test case enables future extension of the approach to other flexible
elements in saccharides, such as glycosidic linkage conformation
Conformational Populations of β‑(1→4) <i>O</i>‑Glycosidic Linkages Using Redundant NMR <i>J</i>‑Couplings and Circular Statistics
Twelve
disaccharides containing β-(1→4) linkages and
displaying systematic structural variations in the vicinity of these
linkages were selectively labeled with <sup>13</sup>C to facilitate
measurements of multiple NMR spin–spin (scalar; <i>J</i>) coupling constants (<i>J</i><sub>CH</sub> and <i>J</i><sub>CC</sub> values) across their <i>O</i>-glycosidic
linkages. Ensembles of spin-couplings (<sup>2</sup><i>J</i><sub>COC</sub>, <sup>3</sup><i>J</i><sub>COCH</sub>, <sup>3</sup><i>J</i><sub>COCC</sub>) sensitive to the two linkage
torsion angles, phi (ϕ) and psi (ψ), were analyzed by
using parametrized equations obtained from density functional theory
(DFT) calculations, Fredholm theory, and circular statistics to calculate
experiment-based rotamer populations for ϕ and ψ in each
disaccharide. With the statistical program <i>MA′AT</i>, torsion angles ϕ and ψ were modeled as a single von
Mises distribution, which yielded two parameters, the mean position
and the circular standard deviation (CSD) for each angle. The NMR-derived
rotamer populations were compared to those obtained from 1 μs
aqueous molecular dynamics (MD) simulations and crystallographic database
statistical analyses. Conformer populations obtained exclusively from
the <i>MA′AT</i> treatment of redundant <i>J</i>-couplings were in very good agreement with those obtained from the
MD simulations, providing evidence that conformational populations
can be determined by NMR for mobile molecular elements such as <i>O</i>-glycosidic linkages with minimal input from theory. The
approach also provides an experimental means to validate the conformational
preferences predicted from MD simulations. The conformational behaviors
of Ï• in the 12 disaccharides were very similar, but those of
ψ varied significantly, allowing a classification of the 12
disaccharides based on preferred linkage conformation in solution