357 research outputs found
Internal Stresses, Normal Modes, and Nonaffinity in Three-Dimensional Biopolymer Networks
We numerically investigate deformations and modes of networks of semiflexible biopolymers as a function of crosslink coordination number z and strength of bending and stretching energies. In equilibrium filaments are under internal stress, and the networks exhibit shear rigidity below the Maxwell isostatic point. In contrast to two-dimensional networks, ours exhibit nonaffine bending-dominated response in all rigid states, including those near the maximum of z = 4 when bending energies are less than stretching ones
Nonaffine Correlations in Random Elastic Media
Materials characterized by spatially homogeneous elastic moduli undergo
affine distortions when subjected to external stress at their boundaries, i.e.,
their displacements \uv (\xv) from a uniform reference state grow linearly
with position \xv, and their strains are spatially constant. Many materials,
including all macroscopically isotropic amorphous ones, have elastic moduli
that vary randomly with position, and they necessarily undergo nonaffine
distortions in response to external stress. We study general aspects of
nonaffine response and correlation using analytic calculations and numerical
simulations. We define nonaffine displacements \uv' (\xv) as the difference
between \uv (\xv) and affine displacements, and we investigate the
nonaffinity correlation function
and related functions. We introduce four model random systems with random
elastic moduli induced by locally random spring constants, by random
coordination number, by random stress, or by any combination of these. We show
analytically and numerically that scales as A |\xv|^{-(d-2)}
where the amplitude is proportional to the variance of local elastic moduli
regardless of the origin of their randomness. We show that the driving force
for nonaffine displacements is a spatial derivative of the random elastic
constant tensor times the constant affine strain. Random stress by itself does
not drive nonaffine response, though the randomness in elastic moduli it may
generate does. We study models with both short and long-range correlations in
random elastic moduli.Comment: 22 Pages, 18 figures, RevTeX
On the relevance of percolation theory to the vulcanization transition
The relationship between vulcanization and percolation is explored from the
perspective of renormalized local field theory. We show rigorously that the
vulcanization and percolation correlation functions are governed by the same
Gell--Mann-Low renormalization group equation. Hence, all scaling aspects of
the vulcanization transition are reigned by the critical exponents of the
percolation universality class.Comment: 9 pages, 2 figure
Unzipping Vortices in Type-II Superconductors
The unzipping of vortex lines using magnetic-force microscopy from extended
defects is studied theoretically. We study both the unzipping isolated vortex
from common defects, such as columnar pins and twin-planes, and the unzipping
of a vortex from a plane in the presence of other vortices. We show, using
analytic and numerical methods, that the universal properties of the unzipping
transition of a single vortex depend only on the dimensionality of the defect
in the presence and absence of disorder. For the unzipping of a vortex from a
plane populated with many vortices is shown to be very sensitive to the
properties of the vortices in the two-dimensional plane. In particular such
unzipping experiments can be used to measure the ``Luttinger liquid parameter''
of the vortices in the plane. In addition we suggest a method for measuring the
line tension of the vortex directly using the experiments.Comment: 19 pages 15 figure
Replica Symmetry Breaking and the Renormalization Group Theory of the Weakly Disordered Ferromagnet
We study the critical properties of the weakly disordered -component
ferromagnet in terms of the renormalization group (RG) theory generalized to
take into account the replica symmetry breaking (RSB) effects coming from the
multiple local minima solutions of the mean-field equations. It is shown that
for the traditional RG flows at dimensions , which are
usually considered as describing the disorder-induced universal critical
behavior, are unstable with respect to the RSB potentials as found in spin
glasses. It is demonstrated that for a general type of the Parisi RSB
structures there exists no stable fixed points, and the RG flows lead to the
{\it strong coupling regime} at the finite scale , where
is the small parameter describing the disorder. The physical concequences
of the obtained RG solutions are discussed. In particular, we argue, that
discovered RSB strong coupling phenomena indicate on the onset of a new spin
glass type critical behaviour in the temperature interval near . Possible relevance of the considered RSB effects for
the Griffith phase is also discussed.Comment: 32 pages, Late
Topological Defects on Fluctuating Surfaces: General Properties and the Kosterlitz-Thouless Transition
We investigate the Kosterlitz-Thouless transition for hexatic order on a free
fluctuating membrane and derive both a Coulomb gas and a sine-Gordon
Hamiltonian to describe it. The Coulomb-gas Hamiltonian includes charge
densities arising from disclinations and from Gaussian curvature. There is an
interaction coupling the difference between these two densities, whose strength
is determined by the hexatic rigidity, and an interaction coupling Gaussian
curvature densities arising from the Liouville Hamiltonian resulting from the
imposition of a covariant cutoff. In the sine-Gordon Hamiltonian, there is a
linear coupling between a scalar field and the Gaussian curvature. We discuss
gauge-invariant correlation function for hexatic order and the dielectric
constant of the Coulomb gas. We also derive renormalization group recursion
relations that predict a transition with decreasing bending rigidity .Comment: REVTEX, 45 pages with 11 postscript figures compressed using uufiles.
Accepted for publication in Phys. Rev.
DNA uptake into nuclei: Numerical and analytical results
The dynamics of polymer translocation through a pore has been the subject of
recent theoretical and experimental works. We have considered theoretical
estimates and performed computer simulations to understand the mechanism of DNA
uptake into the cell nucleus, a phenomenon experimentally investigated by
attaching a small bead to the free end of the double helix and pulling this
bead with the help of an optical trap. The experiments show that the uptake is
monotonous and slows down when the remaining DNA segment becomes very short.
Numerical and analytical studies of the entropic repulsion between the DNA
filament and the membrane wall suggest a new interpretation of the experimental
observations. Our results indicate that the repulsion monotonically decreases
as the uptake progresses. Thus, the DNA is pulled in (i) either by a small
force of unknown origin, and then the slowing down can be interpreted only
statistically; (ii) or by a strong but slow ratchet mechanism, which would
naturally explain the observed monotonicity, but then the slowing down requires
additional explanations. Only further experiments can unambiguously distinguish
between these two mechanisms.Comment: 12 pages, 6 figures, submitted to J. Phys. Cond. Ma
Crystalline Order on a Sphere and the Generalized Thomson Problem
We attack generalized Thomson problems with a continuum formalism which
exploits a universal long range interaction between defects depending on the
Young modulus of the underlying lattice. Our predictions for the ground state
energy agree with simulations of long range power law interactions of the form
1/r^{gamma} (0 < gamma < 2) to four significant digits. The regime of grain
boundaries is studied in the context of tilted crystalline order and the
generality of our approach is illustrated with new results for square tilings
on the sphere.Comment: 4 pages, 5 eps figures Fig. 2 revised, improved Fig. 3, reference
typo fixe
Analysis of Nematic Liquid Crystals with Disclination Lines
We investigate the structure of nematic liquid crystal thin films described
by the Landau--de Gennes tensor-valued order parameter with Dirichlet boundary
conditions of nonzero degree. We prove that as the elasticity constant goes to
zero a limiting uniaxial texture forms with disclination lines corresponding to
a finite number of defects, all of degree 1/2 or all of degree -1/2. We also
state a result on the limiting behavior of minimizers of the Chern-Simons-Higgs
model without magnetic field that follows from a similar proof.Comment: 40 pages, 1 figur
Random solids and random solidification: What can be learned by exploring systems obeying permanent random constraints?
In many interesting physical settings, such as the vulcanization of rubber,
the introduction of permanent random constraints between the constituents of a
homogeneous fluid can cause a phase transition to a random solid state. In this
random solid state, particles are permanently but randomly localized in space,
and a rigidity to shear deformations emerges. Owing to the permanence of the
random constraints, this phase transition is an equilibrium transition, which
confers on it a simplicity (at least relative to the conventional glass
transition) in the sense that it is amenable to established techniques of
equilibrium statistical mechanics. In this Paper I shall review recent
developments in the theory of random solidification for systems obeying
permanent random constraints, with the aim of bringing to the fore the
similarities and differences between such systems and those exhibiting the
conventional glass transition. I shall also report new results, obtained in
collaboration with Weiqun Peng, on equilibrium correlations and
susceptibilities that signal the approach of the random solidification
transition, discussing the physical interpretation and values of these
quantities both at the Gaussian level of approximation and, via a
renormalization-group approach, beyond.Comment: Paper presented at the "Unifying Concepts in Glass Physics" workshop,
International Centre for Theoretical Physics, Trieste, Italy (September
15-18, 1999
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