DATASET [Thia 2018 J Anim Ecol]: Bathygobius cocosensis trait covariances

Data, scripts, and results associated with the publication:<br><div><br></div><div>Thia et al. (2018) Larval traits show temporally consistent constraints, but are decoupled from postsettlement juvenile growth, in an intertidal fish. Journal of Animal Ecology.</div

Data_ME15-008_final

This excel file contains information obtained from reviewing ME articles to determine rate of public data archiving, and patio-temporal data provision. The first page contains all data plus notes, details of which are outlined in the readme file. The second page can be downloaded as a .csv for use in our R script

RDat

This data file can be used alongside our R script to generate the results produced in our article. This is identical to page two of our final data excel file. The readme file associated with the excel file should be used to understand the categories here

An individual with <i>Tridacna sp.</i> mtDNA demonstrating valve morphology consistent with <i>Tridacna maxima</i>.

<p>A) <i>Tridacna maxima</i> from Hibernia Reef, WA, Australia. Accession No# P.52722 (Museum Art Gallery Northern Territory (MAGNT)), original identification based on morphology, B) <i>Tridacna sp.</i> from Five Finger Reef, South of Coral Bay, Ningaloo Marine Park, WA, Australia. Accession No#. P.51911 (Museum Art Gallery Northern Territory (MAGNT)), C) <i>Tridacna maxima</i>, from north western WA, Australia, unregistered (Museum Art Gallery Northern Territory (MAGNT)). Photo credit: Shane Penny.</p

Species relationships within <i>Tridacna</i> based an <i>ITS</i> MrBayes consensus tree.

<p>Unalignable regions have been excluded. Bayesian posterior probabilities are above branches and RAxML bootstrap support percentages are below branches.</p

Bayesian phylogenetic trees for mitochondrial <i>CO1</i> and <i>16S</i>.

<p>MrBayesian consensus trees constructed for each gene region using all available data. Although different species and regions have differential representation, the two gene trees are concordant, as is expected for linked loci. Thus, overall patterns are consistent among research groups. Branch colors correspond to distinct lineages whose geographic distributions are described in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0080858#pone-0080858-g005" target="_blank">Fig. 5</a>.</p

Species relationships within <i>Tridacna</i> based on concatenated mitochondrial DNA (<i>COI</i> and <i>16S</i>) sequences.

<p>The topology shown is a time calibrated maximum clade credibility tree inferred with StarBEAST under a birth-death model. Bayesian posterior probabilities from StarBEAST and MrBayes are above branches and RAxML bootstrap support percentages are below branches. Individuals with two accession numbers include both <i>COI</i> and <i>16S</i> sequences. Individuals that are underlined also appear in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0080858#pone-0080858-g004" target="_blank">Fig. 4</a>.</p