Inferring meta-covariates in classification

This paper develops an alternative method for gene selection that combines model based clustering and binary classification. By averaging the covariates within the clusters obtained from model based clustering, we define “meta-covariates” and use them to build a probit regression model, thereby selecting clusters of similarly behaving genes, aiding interpretation. This simultaneous learning task is accomplished by an EM algorithm that optimises a single likelihood function which rewards good performance at both classification and clustering. We explore the performance of our methodology on a well known leukaemia dataset and use the Gene Ontology to interpret our results

PHS48 Cost-Effectiveness Analysis of Tolvaptan for Hyponatreamia in South Korea

Lanz, AlfredoPla general de la part frontal de dona ajaguda sobre un suport en forma de llit o taula. Va ser donada per l'autor, Alfredo Lanz, i simbolitza el mar Mediterrani. Feta en tres planxes d'acer retallades de colors vius: verd, vermell i groc

Antarctic Station Based Seasonal Pressure Reconstructions Since 1905, Part 1: Reconstruction Evaluation

Seasonal mean Antarctic pressures at 17 stations are reconstructed based on the method of principal component regression, employing midlatitude pressure data as predictors. Several reconstruction methods were performed in order to assess the stability and reliability of the reconstructions obtained, including performing the reconstructions over a shorter 30 year window and withholding the remaining data for an independent validation. Generally, there were small differences between the various approaches, but typically reconstructions conducted on data with the trends still present and over the full period of observations achieved the highest skill. Seasonally, reconstruction skill was high in austral summer across the entire Antarctic continent. Reconstructions that employed gridded pressure data over oceans as well as the observations (here termed “pseudoreconstructions”) also performed remarkably well in austral winter. Spatially, the reconstruction skill was highest near the Antarctic Peninsula in all seasons, and weakest in coastal East Antarctica and the Antarctic Interior during austral spring and autumn; the spatial variability of the skill in part reflects the distance to the nearest midlatitude predictor. Nonetheless, for nearly all seasons and locations the observed trends since 1957 were well captured by the reconstructions, as was the low-frequency decadal-scale variability. These results suggest Antarctic pressure observations can be extended throughout the twentieth century with high confidence, especially in summer, allowing for a more precise understanding of the role and magnitude of natural atmospheric circulation variability across Antarctica

2D vs. 3D pain visualization: User preferences in a spinal cord injury cohort

This is the post-print version of the Article. The official published version can be accessed from the link below - Copyright @ 2011 Springer VerlagResearch on pain experienced after Spinal Cord Injury (SCI) has revealed that not only are there several types of pain present in the same individual with this kind of trauma, but also that people who suffer such an injury can describe the characteristics of the same type of pain in different ways. Making it possible, therefore, to more precisely describe pain experience could prove to be vital for an increased quality of life. Accordingly, fifteen individuals with pain after SCI were asked to describe their pain experience using a 3 Dimensional (3D) model of the human body that could be used as an aid in communicating their pain. The results of this study suggest that the consensus of the participants approved the ability of the 3D model to more accurately describe their pain, an encouraging outcome towards the use of 3D technology in support of post SCI pain rehabilitation

Antarctic station-based seasonal pressure reconstructions since 1905: 2. Variability and trends during the twentieth century

The Antarctic seasonal station-based pressure reconstructions evaluated in our companion paper are evaluated here to provide additional knowledge on Antarctic pressure variability during the twentieth century. In the period from 1905 to 1956, we find that the Hadley Centre gridded sea level pressure data set compared the best with our reconstructions, perhaps due to similar methods to estimate pressure without direct observations. The primary focus on the twentieth century Antarctic pressure variability was in summer and winter, as these were the seasons with the highest reconstruction skill. In summer, there is considerable interannual variability that was spatially uniform across all of Antarctica. Notable high pressure anomalies were found in the summers of 1911/1912 and 1925/1926; both summers correspond to negative phases of the Southern Annular Mode as well as El Niño events in the tropical Pacific. In addition, negative summer pressure trends during the last ~40 years across all of Antarctica are unique in the context of 30 year trends throughout the entire twentieth century, suggesting a strong component of anthropogenic forcing on the recent summer trends. In contrast, mean winter pressure is less variable from year to year during the early twentieth century, and there is less similarity between the pressure variations along the Antarctic Peninsula compared to the rest of the continent. No significant pressure trends were found consistently across all Antarctica (although some significant regional trends can be identified), and low-frequency, multidecadal-scale variability appears to dominate the historical pressure variations in this season

Critical behavior of the frustrated antiferromagnetic six-state clock model on a triangular lattice

We study the anti-ferromagnetic six-state clock model with nearest neighbor interactions on a triangular lattice with extensive Monte-Carlo simulations. We find clear indications of two phase transitions at two different temperatures: Below $T_I$ a chirality order sets in and by a thorough finite size scaling analysis of the specific heat and the chirality correlation length we show that this transition is in the Ising universality class (with a non-vanishing chirality order parameter below $T_I$). At $T_{KT}(<T_I)$ the spin-spin correlation length as well as the spin susceptibility diverges according to a Kosterlitz-Thouless (KT) form and spin correlations decay algebraically below $T_{KT}$. We compare our results to recent x-ray diffraction experiments on the orientational ordering of CF$_3$Br monolayers physisorbed on graphite. We argue that the six-state clock model describes the universal feature of the phase transition in the experimental system and that the orientational ordering belongs to the KT universality class.Comment: 8 pages, 9 figure

Conformal Anomaly and Critical Exponents of the XY-Ising Model

We use extensive Monte Carlo transfer matrix calculations on infinite strips of widths $L$ up to 30 lattice spacing and a finite-size scaling analysis to obtain critical exponents and conformal anomaly number $c$ for the two-dimensional $XY$-Ising model. This model is expected to describe the critical behavior of a class of systems with simultaneous $U(1)$ and $Z_2$ symmetries of which the fully frustrated $XY$ model is a special case. The effective values obtained for $c$ show a significant decrease with $L$ at different points along the line where the transition to the ordered phase takes place in a single transition. Extrapolations based on power-law corrections give values consistent with $c=3/2$ although larger values can not be ruled out. Critical exponents are obtained more accurately and are consistent with previous Monte Carlo simulations suggesting new critical behavior and with recent calculations for the frustrated $XY$ model.Comment: 33 pages, 13 latex figures, uses RevTeX 3.

Giant Shapiro steps for two-dimensional Josephson-junction arrays with time-dependent Ginzburg-Landau dynamics

Two-dimensional Josephson junction arrays at zero temperature are investigated numerically within the resistively shunted junction (RSJ) model and the time-dependent Ginzburg-Landau (TDGL) model with global conservation of current implemented through the fluctuating twist boundary condition (FTBC). Fractional giant Shapiro steps are found for {\em both} the RSJ and TDGL cases. This implies that the local current conservation, on which the RSJ model is based, can be relaxed to the TDGL dynamics with only global current conservation, without changing the sequence of Shapiro steps. However, when the maximum widths of the steps are compared for the two models some qualitative differences are found at higher frequencies. The critical current is also calculated and comparisons with earlier results are made. It is found that the FTBC is a more adequate boundary condition than the conventional uniform current injection method because it minimizes the influence of the boundary.Comment: 6 pages including 4 figures in two columns, final versio

The Aharonov-Bohm Effect in the Fractional Quantum Hall Regime

We have investigated experimentally resonant tunnelling through single-particle states formed around an antidot by a magnetic field, in the fractional quantum Hall regime. For 1/3 filling factor around the antidot, Aharonov-Bohm oscillations are observed with the same magnetic field period as in the integer quantum Hall regime. All our measurements are consistent with quasiparticles of fractional charge e*. However, the results are also consistent with particles of any charge (>= e*) as the system must rearrange every time the flux enclosed increases by h/e.Comment: Postscript, 4 pages, gzipped (350 kB

Synchronization in a System of Globally Coupled Oscillators with Time Delay

We study the synchronization phenomena in a system of globally coupled oscillators with time delay in the coupling. The self-consistency equations for the order parameter are derived, which depend explicitly on the amount of delay. Analysis of these equations reveals that the system in general exhibits discontinuous transitions in addition to the usual continuous transition, between the incoherent state and a multitude of coherent states with different synchronization frequencies. In particular, the phase diagram is obtained on the plane of the coupling strength and the delay time, and ubiquity of multistability as well as suppression of the synchronization frequency is manifested. Numerical simulations are also performed to give consistent results