Entanglement and the nonlinear elastic behavior of forests of coiled carbon nanotubes

Helical or coiled nanostructures have been object of intense experimental and theoretical studies due to their special electronic and mechanical properties. Recently, it was experimentally reported that the dynamical response of foamlike forest of coiled carbon nanotubes under mechanical impact exhibits a nonlinear, non-Hertzian behavior, with no trace of plastic deformation. The physical origin of this unusual behavior is not yet fully understood. In this work, based on analytical models, we show that the entanglement among neighboring coils in the superior part of the forest surface must be taken into account for a full description of the strongly nonlinear behavior of the impact response of a drop-ball onto a forest of coiled carbon nanotubes.Comment: 4 pages, 3 figure

Helical Tubes in Crowded Environments

When placed in a crowded environment, a semi-flexible tube is forced to fold so as to make a more compact shape. One compact shape that often arises in nature is the tight helix, especially when the tube thickness is of comparable size to the tube length. In this paper we use an excluded volume effect to model the effects of crowding. This gives us a measure of compactness for configurations of the tube, which we use to look at structures of the semi-flexible tube that minimize the excluded volume. We focus most of our attention on the helix and which helical geometries are most compact. We found that helices of specific pitch to radius ratio 2.512 to be optimally compact. This is the same geometry that minimizes the global curvature of the curve defining the tube. We further investigate the effects of adding a bending energy or multiple tubes to begin to explore the more complete space of possible geometries a tube could form.Comment: 10 page

Information Loss in Coarse Graining of Polymer Configurations via Contact Matrices

Contact matrices provide a coarse grained description of the configuration omega of a linear chain (polymer or random walk) on Z^n: C_{ij}(omega)=1 when the distance between the position of the i-th and j-th step are less than or equal to some distance "a" and C_{ij}(omega)=0 otherwise. We consider models in which polymers of length N have weights corresponding to simple and self-avoiding random walks, SRW and SAW, with "a" the minimal permissible distance. We prove that to leading order in N, the number of matrices equals the number of walks for SRW, but not for SAW. The coarse grained Shannon entropies for SRW agree with the fine grained ones for n <= 2, but differs for n >= 3.Comment: 18 pages, 2 figures, latex2e Main change: the introduction is rewritten in a less formal way with the main results explained in simple term

Lagrangian Floer superpotentials and crepant resolutions for toric orbifolds

We investigate the relationship between the Lagrangian Floer superpotentials for a toric orbifold and its toric crepant resolutions. More specifically, we study an open string version of the crepant resolution conjecture (CRC) which states that the Lagrangian Floer superpotential of a Gorenstein toric orbifold $\mathcal{X}$ and that of its toric crepant resolution $Y$ coincide after analytic continuation of quantum parameters and a change of variables. Relating this conjecture with the closed CRC, we find that the change of variable formula which appears in closed CRC can be explained by relations between open (orbifold) Gromov-Witten invariants. We also discover a geometric explanation (in terms of virtual counting of stable orbi-discs) for the specialization of quantum parameters to roots of unity which appears in Y. Ruan's original CRC ["The cohomology ring of crepant resolutions of orbifolds", Gromov-Witten theory of spin curves and orbifolds, 117-126, Contemp. Math., 403, Amer. Math. Soc., Providence, RI, 2006]. We prove the open CRC for the weighted projective spaces $\mathcal{X}=\mathbb{P}(1,\ldots,1,n)$ using an equality between open and closed orbifold Gromov-Witten invariants. Along the way, we also prove an open mirror theorem for these toric orbifolds.Comment: 48 pages, 1 figure; v2: references added and updated, final version, to appear in CM

A New Monte Carlo Algorithm for Protein Folding

We demonstrate that the recently proposed pruned-enriched Rosenbluth method (P. Grassberger, Phys. Rev. E 56 (1997) 3682) leads to extremely efficient algorithms for the folding of simple model proteins. We test them on several models for lattice heteropolymers, and compare to published Monte Carlo studies. In all cases our algorithms are faster than all previous ones, and in several cases we find new minimal energy states. In addition to ground states, our algorithms give estimates for the partition sum at finite temperatures.Comment: 4 pages, Latex incl. 3 eps-figs., submitted to Phys. Rev. Lett., revised version with changes in the tex

The XMM Cluster Outskirts Project (X-COP): Physical conditions to the virial radius of Abell 2142

Context. Galaxy clusters are continuously growing through the accretion of matter in their outskirts. This process induces inhomogeneities in the gas density distribution (clumping) which need to be taken into account to recover the physical properties of the intracluster medium (ICM) at large radii. Aims. We studied the thermodynamic properties in the outskirts (R > R500) of the massive galaxy cluster Abell 2142 by combining the Sunyaev Zel'dovich (SZ) effect with the X-ray signal. Methods. We combined the SZ pressure profile measured by Planck with the XMM-Newton gas density profile to recover radial profiles of temperature, entropy and hydrostatic mass out to 2R500. We used a method that is insensitive to clumping to recover the gas density, and we compared the results with traditional X-ray measurement techniques. Results. When taking clumping into account, our joint SZ/X-ray entropy profile is consistent with the predictions from pure gravitational collapse, whereas a significant entropy flattening is found when the effect of clumping is neglected. The hydrostatic mass profile recovered using joint X-ray/SZ data agrees with that obtained from spectroscopic X-ray measurements and with mass reconstructions obtained through weak lensing and galaxy kinematics. Conclusions. We found that clumping can explain the entropy flattening observed by Suzaku in the outskirts of several clusters. When using a method insensitive to clumping for the reconstruction of the gas density, the thermodynamic properties of Abell 2142 are compatible with the assumption that the thermal gas pressure sustains gravity and that the entropy is injected at accretion shocks, with no need to evoke more exotic physics. Our results highlight the need for X-ray observations with sufficient spatial resolution, and large collecting area, to understand the processes at work in cluster outer regions.Comment: 22 pages, 32 figures, accepted in the journal A&

Phase transitions near black hole horizons

The Reissner-Nordstrom black hole in four dimensions can be made unstable without violating the dominant energy condition by introducing a real massive scalar with non-renormalizable interactions with the gauge field. New stable black hole solutions then exist with greater entropy for fixed mass and charge than the Reissner-Nordstrom solution. In these new solutions, the scalar condenses to a non-zero value near the horizon. Various generalizations of these hairy black holes are discussed, and an attempt is made to characterize when black hole hair can occur.Comment: 30 pages, 6 figures. v2: minor corrections, references adde

Statistical Properties of Contact Maps

A contact map is a simple representation of the structure of proteins and other chain-like macromolecules. This representation is quite amenable to numerical studies of folding. We show that the number of contact maps corresponding to the possible configurations of a polypeptide chain of N amino acids, represented by (N-1)-step self avoiding walks on a lattice, grows exponentially with N for all dimensions D>1. We carry out exact enumerations in D=2 on the square and triangular lattices for walks of up to 20 steps and investigate various statistical properties of contact maps corresponding to such walks. We also study the exact statistics of contact maps generated by walks on a ladder.Comment: Latex file, 15 pages, 12 eps figures. To appear on Phys. Rev.