Functional diversity of Toll/interleukin-1 receptor domains in flowering plants and its translational potential

Across the Tree of Life, innate immunity and cell death mechanisms protect hosts from potential pathogens. In prokaryotes, animals, and flowering plants, these functions are often mediated by Toll/interleukin-1 receptor (TIR) domain proteins. Here, we discuss recent analyses of TIR biology in flowering plants, revealing (i) TIR functions beyond pathogen recognition, e.g. in the spatial control of immunity, and (ii) the existence of at least two pathways for TIR signaling in plants. Also, we discuss TIR-based strategies for crop improvement and argue for a need to better understand TIR functions outside of commonly studied dicot pathways for future translational work. Opinions of experts on emerging topics in basic and translational plant TIR research are presented in supplementary video interviews

Development of an automated prototype of THz filter based on magnetic fluids

Many new investigation approaches or techniques that rely on THz radiation are emerging today. It requires the development of devices for controlling THz radiation characteristics intensity, polarization, spectral properties, etc. One of the promising approaches to the implementation of such devices is the use of ferromagnetic fluids. Earlier, the efficient operation of polarizers and non selective THz attenuators based on ferromagnetic liquids was demonstrated. The liquids used consisted of 5BDSR alloy particles obtained by the mechanical synthesis in a planetary mill or Fe particles obtained by the electric explosion, dispersed in synthetic engine oil. Magnetic fluids were controlled using an external magnetic field generated by Helmholtz coils. In this study, we propose a prototype of a THz filter based on previously developed ferromagnetic fluids. Filter consists of a quartz or polymer cuvette with a magnetic fluid, several Helmholtz coils and a control circuit. This device allows one to orient the magnetic particles and to create ordered structures in the form of extended clusters. As a result, physical properties of electromagnets were optimized for effective controlling of particle clusters; the control process itself was automated. Spectral properties in the THz range are studied for various filter states. For reliable continuous operations, the device was supplemented with a homogenization system, based on mechanical mixing or sonication. The developed device can be used as a polarizer or an attenuator for polarized radiation in the range of 0.3-3 THz

Arabidopsis Topless-related 1 mitigates physiological damage and growth penalties of induced immunity

Transcriptional corepressors of the Topless (TPL) family regulate plant hormone and immunity signaling. The lack of a genome-wide profile of their chromatin associations limits understanding of the TPL family roles in transcriptional regulation. Chromatin immunoprecipitation with sequencing (ChIP-Seq) was performed on Arabidopsis thaliana lines expressing GFP-tagged Topless-related 1 (TPR1-GFP) with and without constitutive immunity via Enhanced Disease Susceptibility 1 (EDS1). RNA-Seq profiling of the TPR1-GFP lines and pathogen-infected tpl/tpr mutants, combined with measuring immunity, growth, and physiological parameters was employed to investigate TPL/TPR roles in immunity and defense homeostasis. TPR1 was enriched at promoter regions of c. 1400 genes and c. 10% of the detected binding required EDS1 immunity signaling. In a tpr1 tpl tpr4 (t3) mutant, resistance to bacteria was slightly compromised, and defense-related transcriptional reprogramming was weakly reduced or enhanced, respectively, at early (< 1 h) and late 24 h stages of bacterial infection. The t3 plants challenged with bacteria or pathogen-associated molecular pattern nlp24 displayed photosystem II dysfunctions. Also, t3 plants were hypersensitive to phytocytokine pep1 at the level of root growth inhibition. Transgenic expression of TPR1 rescued these t3 physiological defects. We propose that TPR1 and TPL family proteins function in Arabidopsis to reduce detrimental effects associated with activated transcriptional immunity

Influence of Titania Synthesized by Pulsed Laser Ablation on the State of Platinum during Ammonia Oxidation

A set of physicochemical methods, including X-ray photoelectron spectroscopy (XPS), X-ray diffraction, electron microscopy and X-ray absorption spectroscopy, was applied to study Pt/TiO$_{2}$ catalysts prepared by impregnation using a commercial TiO$_{2}$-P25 support and a support produced by pulsed laser ablation in liquid (PLA). The Pt/TiO$_{2}$-PLA catalysts showed increased thermal stability due to the localization of the highly dispersed platinum species at the intercrystalline boundaries of the support particles. In contrast, the Pt/TiO$_{2}$-P25 catalysts were characterized by uniform distribution of the Pt species over the support. Analysis of Pt4f XP spectra shows that oxidized Pt$^{2+}$ and Pt$^{4+}$ species are formed in the Pt/TiO$_{2}$-P25 catalysts, while the platinum oxidation state in the Pt/TiO$_{2}$-PLA catalysts is lower due to stronger interaction of the active component with the support due to strong interaction via Pt-O-Ti bonds. The Pt4f XP spectra of the samples after reaction show Pt$^{2+}$ and metallic platinum, which is the catalytically active species. The study of the catalytic properties in ammonia oxidation showed that, unlike the catalysts prepared with a commercial support, the Pt/TiO$_{2}$-PLA samples show higher stability during catalysis and significantly higher selectivity to N$_{2}$ in a wide temperature range of 200–400 °C

Arabidopsis Topless-related 1 mitigates physiological damage and growth penalties of induced immunity

Transcriptional corepressors of the Topless (TPL) family regulate plant hormone and immunity signaling. The lack of a genome-wide profile of their chromatin associations limits understanding of the TPL family roles in transcriptional regulation. Chromatin immunoprecipitation with sequencing (ChIP-Seq) was performed on Arabidopsis thaliana lines expressing GFP-tagged Topless-related 1 (TPR1-GFP) with and without constitutive immunity via Enhanced Disease Susceptibility 1 (EDS1). RNA-Seq profiling of the TPR1-GFP lines and pathogen-infected tpl/tpr mutants, combined with measuring immunity, growth, and physiological parameters was employed to investigate TPL/TPR roles in immunity and defense homeostasis. TPR1 was enriched at promoter regions of c. 1400 genes and c. 10% of the detected binding required EDS1 immunity signaling. In a tpr1 tpl tpr4 (t3) mutant, resistance to bacteria was slightly compromised, and defense-related transcriptional reprogramming was weakly reduced or enhanced, respectively, at early (< 1 h) and late 24 h stages of bacterial infection. The t3 plants challenged with bacteria or pathogen-associated molecular pattern nlp24 displayed photosystem II dysfunctions. Also, t3 plants were hypersensitive to phytocytokine pep1 at the level of root growth inhibition. Transgenic expression of TPR1 rescued these t3 physiological defects. We propose that TPR1 and TPL family proteins function in Arabidopsis to reduce detrimental effects associated with activated transcriptional immunity

Basal expression of immune receptor genes requires low levels of the phytohormone salicylic acid

The hormone salicylic acid (SA) plays a crucial role in plant immunity by activating responses that arrest pathogen ingress. Since SA accumulation also penalizes growth, the question remains why healthy plants synthesize this hormone. By overexpressing SA-inactivating hydroxylases in Arabidopsis thaliana, we reveal that basal SA levels in unchallenged plants are needed for expression of selected immune receptor and signaling genes, thereby enabling early pathogen detection and activation of immunity

Identification of autoimmune markers in pulmonary tuberculosis

IntroductionPathogenesis of many autoimmune diseases is mainly promoted by poorly regulated and/or wrong targeted immune response to pathogens including M. tuberculosis. Autoimmunity is one of the processes with are characteristics of tuberculosis (Tbc). The aim was to determine the autoimmune clinical and immunological features in patients with pulmonary Tbc.Materials and methodsA prospective comparative study was performed in 2017 – 2019 with the inclusion of 46 patients with Tbc. The trigger factors and clinical manifestations, autoantibodies, peripheral blood B cell subsets were stained with fluorochrome-conjugated monoclonal antibodies. 40 healthy volunteers in the control group, were matched for age with no chronic diseases, contacts with TB patients and changes in their laboratory parameters. A statistical analysis was done with GraphPad Prism 6, Statistica 10 (Statsoft) and MedCalc – version 18.2.1 values.ResultsThere were no significant ASIA triggers in Tbc patients and control group. 21.1% of Tbc patients had a high level of a rheumatoid factor and in 47.4% complement system factor C3 was high; anti-MCV was detected in 60.7% of Tbc patients. Relative and absolute frequencies of “naïve” Bm1 cells and eBm5 were significantly decreased and activated pre-germinal-center Bm2’ cells were significantly increased in Tbc patients. The CD24++CD38++ B cells were increased in Tbc vs control group (10.25% vs 5.42%), p &lt; 0.001, and 19 cell/1μL (10; 290 vs 11 cell/1μL (6; 20), p = 0.029, respectively). The frequency of CXCR3+CCR4– Tfh1 cells was significantly lower in Tbc vs control one (26.52% vs. 31.00%, p = 0.004), while CXCR3–CCR4+ Tfh2 cells were increased in Tbc (20.31% vs. controls (16.56%, p = 0.030). The absolute numbers of Tfh1 cells were decreased in the Tbc vs. control (24 cell/1μL vs. 37 cell/1μL p = 0.005).ConclusionThe results of our study showed that the detection of a rheumatoid factor, the components of complement system and anti-MCV in complex with alterations in B cells and follicular Th cell subsets may indicate a presence of autoimmunity in the pathogenesis of tuberculosis, but they are not specific. The indicators of autoimmune-related provide new opportunities in the Tbc treatment

Obligate biotroph downy mildew consistently induces near-identical protective microbiomes in Arabidopsis thaliana

Hyaloperonospora arabidopsidis (Hpa) is an obligately biotrophic downy mildew that is routinely cultured on Arabidopsis thaliana hosts that harbour complex microbiomes. We hypothesized that the culturing procedure proliferates Hpa-associated microbiota (HAM) in addition to the pathogen and exploited this model system to investigate which microorganisms consistently associate with Hpa. Using amplicon sequencing, we found nine bacterial sequence variants that are shared between at least three out of four Hpa cultures in the Netherlands and Germany and comprise 34% of the phyllosphere community of the infected plants. Whole-genome sequencing showed that representative HAM bacterial isolates from these distinct Hpa cultures are isogenic and that an additional seven published Hpa metagenomes contain numerous sequences of the HAM. Although we showed that HAM benefit from Hpa infection, HAM negatively affect Hpa spore formation. Moreover, we show that pathogen-infected plants can selectively recruit HAM to both their roots and shoots and form a soil-borne infection-associated microbiome that helps resist the pathogen. Understanding the mechanisms by which infection-associated microbiomes are formed might enable breeding of crop varieties that select for protective microbiomes