Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018.

Over the past decade, the Nomenclature Committee on Cell Death (NCCD) has formulated guidelines for the definition and interpretation of cell death from morphological, biochemical, and functional perspectives. Since the field continues to expand and novel mechanisms that orchestrate multiple cell death pathways are unveiled, we propose an updated classification of cell death subroutines focusing on mechanistic and essential (as opposed to correlative and dispensable) aspects of the process. As we provide molecularly oriented definitions of terms including intrinsic apoptosis, extrinsic apoptosis, mitochondrial permeability transition (MPT)-driven necrosis, necroptosis, ferroptosis, pyroptosis, parthanatos, entotic cell death, NETotic cell death, lysosome-dependent cell death, autophagy-dependent cell death, immunogenic cell death, cellular senescence, and mitotic catastrophe, we discuss the utility of neologisms that refer to highly specialized instances of these processes. The mission of the NCCD is to provide a widely accepted nomenclature on cell death in support of the continued development of the field

Anaerobic digestion potential of urban organic waste: a case study in Malmo

A study of existing organic waste types in Malmo, Sweden was performed. The purpose was to gather information about organic waste types in the city to be able to estimate the potential for anaerobic treatment in existing digesters at the wastewater treatment plan (WWTP). The urban organic waste types that could have a significant potential for anaerobic digestion amount to about 50 000 tonnes year(-1) (sludge excluded). Some of the waste types were further evaluated by methane potential tests and continuous pilot-scale digestion. Single -substrate digestion and co-digestion of pre-treated, source-sorted organic fraction of municipal solid waste, wastewater sludge, sludge from grease traps and fruit and vegetable waste were carried out. The experiments showed that co-digestion of grease sludge and WWTP sludge was a better way of making use of the methane potential in the grease trap sludge than single-substrate digestion. Another way of increasing the methane production in sludge digesters is to add source-sorted organic fraction of municipal solid waste (SSOFMSW). Adding SSOFMSW (20% of the total volatile solids) gave a 10-15% higher yield than could be expected by comparison with separate digestion of sludge respective SSOFMSW Co-digestion of sludge and organic waste is beneficial not just for increasing gas production but also for stabilizing the digestion process. This was seen when co-digesting fruit and vegetable waste and sludge. When co-digested with sludge, this waste gave a better result than the separate digestion of fruit and vegetable waste. Considering single-substrate digestion, SSOFMSW is the only waste in the study which makes up a sufficient quantity to be suitable as the base substrate in a full-scale digester that is separated from the sludge digestion. The two types of SSOFMSW tested in the pilot-scale digestion were operated successfully at mesophilic temperature. By adding SSOFMSW, grease trap sludge and fruit and vegetables waste to sludge digesters at the wastewater treatment plant, the yearly energy production from methane could be expected to increase from 24 to 43 GWh

Proteome of fluid from human ovarian small antral follicles reveals insights in folliculogenesis and oocyte maturation

STUDY QUESTION: Is it possible to identify by mass spectrometry a wider range of proteins and key proteins involved in folliculogenesis and oocyte growth and development by studying follicular fluid (FF) from human small antral follicles (hSAF)?SUMMARY ANSWER: The largest number of proteins currently reported in human FF was identified in this study analysing hSAF where several proteins showed a strong relationship with follicular developmental processes.WHAT IS KNOWN ALREADY: Protein composition of human ovarian FF constitutes the microenvironment for oocyte development. Previous proteomics studies have analysed fluids from pre-ovulatory follicles, where large numbers of plasma constituents are transferred through the follicular basal membrane. This attenuates the detection of low abundant proteins, however, the basal membrane of small antral follicles is less permeable, making it possible to detect a large number of proteins, and thereby offering further insights in folliculogenesis.STUDY DESIGN, SIZE, DURATION: Proteins in FF from unstimulated hSAF (size 6.1 ± 0.4 mm) were characterised by mass spectrometry, supported by high-throughput and targeted proteomics and bioinformatics. The FF protein profiles from hSAF containing oocytes, capable or not of maturing to metaphase II of the second meiotic division during an IVM (n = 13, from 6 women), were also analysed.PARTICIPANTS/MATERIALS, SETTING, METHODS: We collected FF from hSAF of ovaries that had been surgically removed from 31 women (∼28.5 years old) undergoing unilateral ovariectomy for fertility preservation.MAIN RESULTS AND THE ROLE OF CHANCE: In total, 2461 proteins were identified, of which 1108 identified for the first time in FF. Of the identified proteins, 24 were related to follicular regulatory processes. A total of 35 and 65 proteins were down- and up-regulated, respectively, in fluid from hSAF surrounding oocytes capable of maturing (to MII). We found that changes at the protein level occur already in FF from small antral follicles related to subsequent oocyte maturation.LIMITATIONS, REASONS FOR CAUTION: A possible limitation of our study is the uncertainty of the proportion of the sampled follicles that are undergoing atresia. Although the FF samples were carefully aspirated and processed to remove possible contaminants, we cannot ensure the absence of some proteins derived from cellular lysis provoked by technical reasons.WIDER IMPLICATIONS OF THE FINDINGS: This study is, to our knowledge, the first proteomics characterisation of FF from hSAF obtained from women in their natural menstrual cycle. We demonstrated that the analysis by mass spectrometry of FF from hSAF allows the identification of a greater number of proteins compared to the results obtained from previous analyses of larger follicles. Significant differences found at the protein level in hSAF fluid could predict the ability of the enclosed oocyte to sustain meiotic resumption. If this can be confirmed in further studies, it demonstrates that the viability of the oocyte is determined early on in follicular development and this may open up new pathways for augmenting or attenuating subsequent oocyte viability in the pre-ovulatory follicle ready to undergo ovulation.STUDY FUNDING/COMPETING INTEREST(S): The authors thank the financial support from ReproUnion, which is funded by the Interreg V EU programme. No conflict of interest was reported by the authors.TRIAL REGISTRATION NUMBER: N/A