Structure, Scaling and Phase Transition in the Optimal Transport Network

We minimize the dissipation rate of an electrical network under a global constraint on the sum of powers of the conductances. We construct the explicit scaling relation between currents and conductances, and show equivalence to a a previous model [J. R. Banavar {\it et al} Phys. Rev. Lett. {\bf 84}, 004745 (2000)] optimizing a power-law cost function in an abstract network. We show the currents derive from a potential, and the scaling of the conductances depends only locally on the currents. A numerical study reveals that the transition in the topology of the optimal network corresponds to a discontinuity in the slope of the power dissipation.Comment: 4 pages, 3 figure

Expression and function of the bHLH genes ALCATRAZ and SPATULA in selected Solanaceae species

[EN] The genetic mechanisms underlying fruit development have been identified in Arabidopsis and have been comparatively studied in tomato as a representative of fleshy fruits. However, comparative expression and functional analyses on the bHLH genes downstream the genetic network, ALCATRAZ (ALC) and SPATULA (SPT), which are involved in the formation of the dehiscence zone in Arabidopsis, have not been functionally studied in the Solanaceae. Here, we perform detailed expression and functional studies of ALC/SPT homologs in Nicotiana obtusifolia with capsules, and in Capsicum annuum and Solanum lycopersicum with berries. In Solanaceae, ALC and SPT genes are expressed in leaves, and all floral organs, especially in petal margins, stamens and carpels; however, their expression changes during fruit maturation according to the fruit type. Functional analyses show that downregulation of ALC/SPT genes does not have an effect on gynoecium patterning; however, they have acquired opposite roles in petal expansion and have been co-opted in leaf pigmentation in Solanaceae. In addition, ALC/SPT genes repress lignification in time and space during fruit development in Solanaceae. Altogether, some roles of ALC and SPT genes are different between Brassicaceae and Solanaceae; while the paralogs have undergone some subfunctionalization in the former they are mostly redundant in the latter.This work was funded by COLCIENCIAS (111565842812), the iCOOP + 2016 COOPB20250 from the Centro Superior de Investigación Científica, CSIC, the ExpoSeed (H2020.MSCA-RISE-2015-691109) EU grant, the Convocatoria Programáticas 2017-16302, and the Estrategia de Sostenibilidad 2018-2019, from the Universidad de Antioquia. The authors would like to thank the group members of the Ferrándiz and Madueño Labs at IBMCP-UPV for training and help in the standardization of in situ hybridization. Finally, the authors thank Ricardo Callejas and Zulma Monsalve, from the Universidad de Antioquia, for their helpful suggestions during this research.Ortiz-Ramirez, CI.; Giraldo, MA.; Ferrandiz Maestre, C.; Pabon-Mora, N. (2019). Expression and function of the bHLH genes ALCATRAZ and SPATULA in selected Solanaceae species. The Plant Journal. 99(4):686-702. https://doi.org/10.1111/tpj.14352S686702994Golam Masu, A. S. M., Khandaker, L., Berthold, J., Gates, L., Peters, K., Delong, H., & Hossain, K. (2011). Anthocyanin, Total Polyphenols and Antioxidant Activity of Common Bean. American Journal of Food Technology, 6(5), 385-394. doi:10.3923/ajft.2011.385.394Atchley, W. R., Terhalle, W., & Dress, A. (1999). Positional Dependence, Cliques, and Predictive Motifs in the bHLH Protein Domain. 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DIMENSIONALITY BASED SCALE SELECTION IN 3D LIDAR POINT CLOUDS

International audienceThis papers presents a multi-scale method that computes robust geometric features on lidar point clouds in order to retrieve the optimal neighborhood size for each point. Three dimensionality features are calculated on spherical neighborhoods at various radius sizes. Based on combinations of the eigenvalues of the local structure tensor, they describe the shape of the neighborhood, indicating whether the local geometry is more linear (1D), planar (2D) or volumetric (3D). Two radius-selection criteria have been tested and compared for finding automatically the optimal neighborhood radius for each point. Besides, such procedure allows a dimensionality labelling, giving significant hints for classification and segmentation purposes. The method is successfully applied to 3D point clouds from airborne, terrestrial, and mobile mapping systems since no a priori knowledge on the distribution of the 3D points is required. Extracted dimensionality features and labellings are then favorably compared to those computed from constant size neighborhoods

More Than Just Adolescence: Differences in Fatigue Between Youth With Cerebral Palsy and Typically Developing Peers

Objective To quantify differences in fatigue and disordered sleep between adolescents with cerebral palsy (CP) and their typically developing peers. A secondary aim was to investigate the association between fatigue and disordered sleep in adolescents with CP. Methods A convenience sample of 36 youth with CP aged 10-18 years was matched for age and sex with 36 typically developing peers. The Fatigue Impact and Severity Self-Assessment (FISSA), the Patient-Reported Outcome Measurement Information System (PROMIS) fatigue profile, and the Sleep Disturbance Scale for Children (SDSC) were collected. Results Higher fatigue was reported in participants with CP than in their typically developing peers based on the FISSA total score (mean paired difference=19.06; 99% confidence interval [CI], 6.06-32.1), the FISSA impact subscale (mean paired difference=11.19; 99% CI, 3.96-18.4), and the FISSA Management and Activity Modification subscale (mean paired difference=7.86; 99% CI, 1.1-14.6). There were no differences between groups in the PROMIS fatigue profile (mean paired difference=1.63; 99% CI, -1.57-4.83) or the SDSC total score (mean paired difference=2.71; 99% CI, -2.93-8.35). Conclusion Youth with CP experienced significantly more fatigue than their peers as assessed by a comprehensive measure that considered both general and diagnosis-specific concerns. Sleep did not differ between youth with CP and their typically developing peers. These findings underscore the need to consider the clinical management of fatigue across the lifespan of individuals with CP to prevent the associated deterioration of functional abilities

When the path is never shortest: a reality check on shortest path biocomputation

Shortest path problems are a touchstone for evaluating the computing performance and functional range of novel computing substrates. Much has been published in recent years regarding the use of biocomputers to solve minimal path problems such as route optimisation and labyrinth navigation, but their outputs are typically difficult to reproduce and somewhat abstract in nature, suggesting that both experimental design and analysis in the field require standardising. This chapter details laboratory experimental data which probe the path finding process in two single-celled protistic model organisms, Physarum polycephalum and Paramecium caudatum, comprising a shortest path problem and labyrinth navigation, respectively. The results presented illustrate several of the key difficulties that are encountered in categorising biological behaviours in the language of computing, including biological variability, non-halting operations and adverse reactions to experimental stimuli. It is concluded that neither organism examined are able to efficiently or reproducibly solve shortest path problems in the specific experimental conditions that were tested. Data presented are contextualised with biological theory and design principles for maximising the usefulness of experimental biocomputer prototypes.Comment: To appear in: Adamatzky, A (Ed.) Shortest path solvers. From software to wetware. Springer, 201