Seasonal variation of bacterial diversity along the marine particulate matter continuum

© Copyright © 2020 Mestre, Höfer, Sala and Gasol. Seasonal dynamics of ocean prokaryotic communities in the free-living fraction have been widely described, but less is known about the seasonality of prokaryotes inhabiting marine particles. We describe the seasonality of bacterial communities in the particulate matter continuum by sampling monthly over two years in a temperate oligotrophic coastal ecosystem and using a serial filtration (including six size-fractions spanning from 0.2 to 200 μm). We observed that bacterial communities in the particulate matter continuum had annual changes following harmonic seasonal oscillations, where alpha, beta, and gamma diversity increased during the warm period and decreased during the cold period. Communities in each size-fraction changed gradually over time, being the communities in larger size-fractions the ones with stronger annual changes. Annual community changes were driven mainly by day length and sea surface temperature, and each size-fraction was additionally affected by other variables (e.g., smaller size-fractions by dissolved PO4 and larger size-fractions by turbidity). While some taxonomic groups mantained their preference for a given size fraction during most of the year, others varied their distribution into different size fractions over time, as e.g., SAR11, which increased its presence in particles during the cold period. Our results indicate that the size-fractionation scheme provides novel seasonal patterns that are not possible to unveil by analyzing only free-living bacteria, and that help to better understand the temporal dynamics of prokaryotes

A GPU-based Correlator X-engine Implemented on the CHIME Pathfinder

We present the design and implementation of a custom GPU-based compute cluster that provides the correlation X-engine of the CHIME Pathfinder radio telescope. It is among the largest such systems in operation, correlating 32,896 baselines (256 inputs) over 400MHz of radio bandwidth. Making heavy use of consumer-grade parts and a custom software stack, the system was developed at a small fraction of the cost of comparable installations. Unlike existing GPU backends, this system is built around OpenCL kernels running on consumer-level AMD GPUs, taking advantage of low-cost hardware and leveraging packed integer operations to double algorithmic efficiency. The system achieves the required 105TOPS in a 10kW power envelope, making it among the most power-efficient X-engines in use today.Comment: 6 pages, 5 figures. Accepted by IEEE ASAP 201

Lipid biomarkers reveal trophic relationships and energetic trade‐offs in contrasting phenotypes of the cold‐water coral Desmophyllum dianthus in Comau Fjord, Chile

Benthic suspension feeders like corals and sponges are important bioengineers in many marine habitats, from the shallow tropics to the depth of polar oceans. While they are generally considered opportunistic, little is known about their actual in situ diet. To tackle this limitation, fatty acid trophic markers (FATMs) have been employed to gain insights into the composition of their diet. Yet, these in situ studies have not been combined with physiological investigations to understand how physiological limitations may modulate the biochemistry of these organisms. Here, we used the cold-water coral (CWC) Desmophyllum dianthus in its natural habitat in Comau Fjord (Northern Patagonia, Chile) as our model species to assess the trophic ecology in response to contrasting physico-chemical conditions (variable vs. stable) and ecological drivers (food availability) at three shallow sites and one deep site. We took advantage of the expression of two distinct phenotypes with contrasting performance (growth, biomass, respiration) coinciding with the differences in sampling depth. We analysed the corals' fatty acid composition to evaluate the utility of FATM profiles to gain dietary insights and assess how performance trade-offs potentially modulate an organism's FATM composition. We found that 20:1(n-9) zooplankton markers dominated the deep high-performance phenotype, while 20:5(n-3) and 22:6(n-3) diatom and flagellate markers, respectively, are more prominent in shallow low-performance phenotype. Surprisingly, both energy stores and performance were higher in the deep phenotype, in spite of measured lower zooplankton availability. Essential FA concentrations were conserved across sites, likely reflecting required levels for coral functioning and survival. While the deep high-performance phenotype met with these requirements, the low-performance phenotype appeared to need more energy to maintain functionality in its highly variable environment, potentially causing intrinsic re-allocations of energy and enrichment in certain essential markers (20:5(n-3), 22:6(n-3)). Our analysis highlights the biological and ecological insights that can be gained from FATM profiles in CWCs, but also cautions the reliability of FATM as diet tracers under limiting environmental conditions that may also be applicable to other marine organisms. Read the free Plain Language Summary for this article on the Journal blog

Spectral characterization, radiative forcing and pigment content of coastal Antarctic snow algae: approaches to spectrally discriminate red and green communities and their impact on snowmelt

Here, we present radiative forcing (RF) estimates by snow algae in the Antarctic Peninsula (AP) region from multi-year measurements of solar radiation and ground-based hyperspectral characterization of red and green snow algae collected during a brief field expedition in austral summer&nbsp;2018. Our analysis includes pigment content from samples at three bloom sites. Algal biomass in the snow and albedo reduction are well-correlated across the visible spectrum. Relative to clean snow, visibly green patches reduce snow albedo by &sim;40&thinsp;% and red patches by &sim;20&thinsp;%.&nbsp;However, red communities absorb considerably more light per milligram of pigment compared to green communities, particularly in green wavelengths. Based on our study results, it should be possible to differentiate red and green algae using Sentinel-2 bands in blue, green and red wavelengths. Instantaneous RF averages were double for green (180&thinsp;W&thinsp;m&minus;2) vs. red communities (88&thinsp;W&thinsp;m&minus;2), with a maximum of 228&thinsp;W&thinsp;m&minus;2. Based on multi-year solar radiation measurements at Palmer Station, this translated to a mean daily RF of &sim;26&thinsp;W&thinsp;m&minus;2 (green) and &sim;13&thinsp;W&thinsp;m&minus;2 (red) during peak growing season &ndash; on par with midlatitude dust attributions capable of advancing snowmelt. This results in &sim;2522&thinsp;m3 of snow melted by green-colored algae and &sim;1218&thinsp;m3 of snow melted by red-colored algae annually over the summer, suggesting snow algae play a significant role in snowmelt in the AP regions where they occur. We suggest impacts of RF by snow algae on snowmelt be accounted for in future estimates of Antarctic ice-free expansion in the AP region. The requested paper has a corresponding corrigendum published. Please read the corrigendum first before downloading the article. &nbsp; &nbsp;</p

All you can eat: the functional response of the cold-water coral Desmophyllum dianthus feeding on krill and copepods

The feeding behavior of the cosmopolitan cold-water coral (CWC) Desmophyllum dianthus (Cnidaria: Scleractinia) is still poorly known. Its usual deep distribution restricts direct observations, and manipulative experiments are so far limited to prey that do not occur in CWC natural habitat. During a series of replicated incubations, we assessed the functional response of this coral feeding on a medium-sized copepod (Calanoides patagoniensis) and a large euphausiid (Euphausia vallentini). Corals showed a Type I functional response, where feeding rate increased linearly with prey abundance, as predicted for a tentaculate passive suspension feeder. No significant differences in feeding were found between prey items, and corals were able to attain a maximum feeding rate of 10.99 mg C h−1, which represents an ingestion of the 11.4% of the coral carbon biomass per hour. These findings suggest that D. dianthus is a generalist zooplankton predator capable of exploiting dense aggregations of zooplankton over a wide prey size-range

General Hydrography of the Beagle Channel, a Subantarctic Interoceanic Passage at the Southern Tip of South America

The Beagle Channel (BC) is a long and narrow interoceanic passage (∼270 km long and 1–12 km wide) with west-east orientation and complex bathymetry connecting the Pacific and Atlantic oceans at latitude 55°S. This study is the first integrated assessment of the main oceanographic features of the BC, using recent oceanographic observations from cruises, moored instruments and historical observations. The waters transported into the BC are supplied mainly by the Cape Horn Current, which carries Subantarctic Water (SAAW) at depth (100 m below surface) along the Pacific Patagonian continental shelf break. SAAW enters the continental shelf via a submarine canyon at the western entrance of the BC. The SAAW is diluted by fresh, nutrient depleted (nitrate, phosphate and silicic acid) Estuarine Water (EW) from Cordillera Darwin Ice Field (CDIF) forming modified SAAW (mSAAW). Freshwater inputs from the CDIF generate a two-layer system with a sharp pycnocline which delimits the vertical distribution of phytoplankton fluorescence (PF). Two shallow sills (<70 m) along the BC contribute to EW and mSAAW mixing and the homogenization of the entire water column east of the sills, coherent with Bernoulli aspiration. The central section of the BC, extending ∼100 km toward the east, is filled by a salty (31–32) variety of EW. In winter, this central section is nearly vertically homogeneous with low nutrient concentrations (0.9–1.1 μM PO4 and 7.5–10 μM NO3) and PF. The temporal variability of seawater temperature from 50 to 195 m in the central section of the BC was found to be mostly dominated by the annual and semiannual cycles and influenced by tidal forcing. The middle section of the BC was less influenced by oceanic inputs and its basin-like structure most likely favors retention, which was observed from the weakly stratified water column at the mooring site. Toward the east, the central section bathymetry is disrupted at Mackinlay Strait where another shallow sill separates the middle channel from the shallow eastern entrance that connects to the Atlantic Ocean. In this section, a weakly stratified two-layer system is formed when the eastward surface outflow (salty-EW) flows over a deeper, denser tongue of oceanic mSAAW.Fil: Giesecke Astorga, Claudio Ricardo. Universidad Austral de Chile; ChileFil: Martín de Nascimento, Jacobo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Austral de Investigaciones Científicas; Argentina. Universidad Nacional de Tierra del Fuego, Antártida e Islas del Atlántico Sur. Instituto de Ciencias Polares, Ambientales y Recursos Naturales; ArgentinaFil: Piñones, Andrea. Universidad Austral de Chile; ChileFil: Höfer, Juan. Pontificia Universidad Católica de Valparaíso; ChileFil: Garcés Vargas, Jose. Universidad Austral de Chile; ChileFil: Flores Melo, Elizabeth Ximena. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Austral de Investigaciones Científicas; ArgentinaFil: Alarcón, Emilio. Universidad Austral de Chile; ChileFil: Durrieu de Madron, Xavier. Centre National de la Recherche Scientifique; FranciaFil: Bourrin, François. Centre National de la Recherche Scientifique; FranciaFil: González, Humberto E.. Universidad Austral de Chile; Chil