Neutrino scattering and flavor transformation in supernovae

We argue that the small fraction of neutrinos that undergo direction-changing scattering outside of the neutrinosphere could have significant influence on neutrino flavor transformation in core-collapse supernova environments. We show that the standard treatment for collective neutrino flavor transformation is adequate at late times, but could be inadequate in the crucial shock revival/explosion epoch of core-collapse supernovae, where the potentials that govern neutrino flavor evolution are affected by the scattered neutrinos. Taking account of this effect, and the way it couples to entropy and composition, will require a new paradigm in supernova modeling.Comment: 5 pages, 3 figure

Halo Modification of a Supernova Neutronization Neutrino Burst

We give the first self-consistent calculation of the effect of the scattered neutrino halo on flavor evolution in supernovae. Our example case is an O-Ne-Mg core collapse supernova neutronization neutrino burst. We find that the addition of the halo neutrinos produces qualitative and quantitative changes in the final flavor states of neutrinos. We also find that the halo neutrinos produce a novel distortion of the neutrino flavor swap. Our results provide strong motivation for tackling the full multidimensional and composition-dependent aspects of this problem in the future.Comment: 14 pages, 13 figures, 1 tabl

Symmetries and reversing symmetries of area-preserving polynomial mappings in generalised standard form

We determine the symmetries and reversing symmetries within G, the group of real planar polynomial automorphisms, of area-preserving nonlinear polynomial maps L in generalised standard form, L: x'=x+p(y), y'=y+q(x'), where p and q are polynomials. We do this by using the amalgamated free product structure of G. Our results lead to normal forms for polynomial maps in generalised standard form and to a classification of the group structures of the reversing symmetry groups for such maps.Comment: 22 page

Data Assimilation using a GPU Accelerated Path Integral Monte Carlo Approach

The answers to data assimilation questions can be expressed as path integrals over all possible state and parameter histories. We show how these path integrals can be evaluated numerically using a Markov Chain Monte Carlo method designed to run in parallel on a Graphics Processing Unit (GPU). We demonstrate the application of the method to an example with a transmembrane voltage time series of a simulated neuron as an input, and using a Hodgkin-Huxley neuron model. By taking advantage of GPU computing, we gain a parallel speedup factor of up to about 300, compared to an equivalent serial computation on a CPU, with performance increasing as the length of the observation time used for data assimilation increases.Comment: 5 figures, submitted to Journal of Computational Physic

Heritable genome editing in C. elegans via a CRISPR-Cas9 system

CRISPR-Cas systems have been used with single-guide RNAs for accurate gene disruption and conversion in multiple biological systems. Here we report the use of the endonuclease Cas9 to target genomic sequences in the C. elegans germline, utilizing single-guide RNAs that are expressed from a U6 small nuclear RNA promoter. Our results demonstrate that targeted, heritable genetic alterations can be achieved in C. elegans, providing a convenient and effective approach for generating loss-of-function mutants

Neuroimaging of Vessel Amyloid in Alzheimer's Disease a , b

Despite extensive recent advances in understanding Alzheimer's disease (AD) we are unable to noninvasively establish a definite diagnosis during life and cannot monitor the cerebral deposition of amyloid Β protein (A/Β) in living patients. We evaluated the use of 10H3, a monoclonal antibody Fab targeting AΒ protein 1-28 labeled with Tc-99m. Six subjects with probable AD were studied using single-photon emission computed tomography (SPECT) at times from 0–24 hours following injection. Curves of radioactivity in blood demonstrate a half-life of the injected Fab of 2–3 hours. Images show uptake around the head in the scalp or bone marrow in all subjects. There is no evidence of cerebral uptake of the antibody. Scalp biopsies in all six patients demonstrate diffuse staining with 10H3 of the scalp, a pattern indistinguishable from that found in controls. Evidence of amyloid deposition in the scalp in AD is not seen with other anti-AΒ antibodies, suggesting that 10H3 is cross-reacting with another protein. Further studies with anti-AΒ antibodies will require longer-lived radionuclides to detect cerebral uptake at later tunes after injection to allow for complete clearance from the blood. Afternately, imaging using labeled AΒ itself may provide a means for noninvasive targeting of cerebral amyloid.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/73674/1/j.1749-6632.1997.tb48475.x.pd

Behavioral Variant Frontotemporal Lobar Degeneration with Amyotrophic Lateral Sclerosis with a Chromosome 9p21 Hexanucleotide Repeat

To determine the genetic basis of familial frontotemporal lobar degeneration (FTLD) with amyotrophic lateral sclerosis (ALS) we performed a clinical and genetic analysis of an affected family. A 51-year-old man with behavioral variant FTLD with ALS had a family history of the disease suggestive of autosomal dominant inheritance with incomplete penetrance. Genetic studies in this patient demonstrated the presence of an amplified hexanucleotide repeat (>30) polymorphism in the chromosome 9 open reading frame 72 (C9ORF72) gene which was previously identified as a cause of FTLD. Five others unaffected from the family were negative (all had less than 11 repeats). Because of the clinical and pathological overlap between FTLD and AD we performed a larger genome-wide association study and did not find association of single nucleotide polymorphisms (SNPs) in the C9ORF72 gene with Alzheimer’s disease (AD) risk. Bioinformatic analysis of C9ORF72 using the Gene Expression Omnibus database showed expression differences in patients with muscular dystrophy, neural tube defects, and schizophrenia. We also report analysis of gene expression in brain regions using the Allen Human Brain Atlas. Defects in this recently reported gene are now believed to be the most common cause of inherited ALS and an important cause of inherited FTLD. Our work suggests that the gene may also be important in other neurological and psychiatric conditions

Research Support Services for Modern Languages and Literatures: Columbia University Libraries Local Report

This study seeks to understand the research practices of scholars in the fields of literature in modern languages, culture (including folklore, performance studies, and literary history) and writing studies. In coordination with twelve other institutions of higher education and the Modern Language Association (which sponsored the project), Columbia University Libraries partnered with Ithaka S+R, a not-for-profit educational research and consulting organization, to conduct this research. As part of Ithaka S+R’s Research and Teaching Practices stream of work, we conducted an in-depth, qualitative study of Columbia tenured and tenure-track faculty to learn more about their research interests, methods and outputs, along with their processes of discovering and accessing sources. Our local data was shared with Ithaka S+R and will inform a capstone report synthesizing findings across all institutions participating in the overall study. This humanities-based research joins the series of other disciplinary-focused reports that Ithaka S+R has coordinated. We present our findings related to the following topics, in an order that tracks the life-cycle of research: scholars’ research focus and methodologies; sources and the search process; and research outputs. Throughout the report we refer to the roles of libraries and library staff in relation to these research practices. We hope Columbia’s local findings will contribute to a more nuanced understanding of the needs of language and literature scholars on a broad scale while surfacing important issues that can inform how we support our faculty locally. In addition, this study also raises issues that may warrant continued assessment and monitoring as we strive to align our expertise and resources with the needs and priorities of faculty