Exploring the Atmosphere of Neoproterozoic Earth: The Effect of O2_{2} on Haze Formation and Composition

Previous studies of haze formation in the atmosphere of the Early Earth have focused on N$_{2}$/CO$_{2}$/CH$_{4}$ atmospheres. Here, we experimentally investigate the effect of O$_{2}$ on the formation and composition of aerosols to improve our understanding of haze formation on the Neoproterozoic Earth. We obtained in situ size, particle density, and composition measurements of aerosol particles produced from N$_{2}$/CO$_{2}$/CH$_{4}$/O$_{2}$ gas mixtures subjected to FUV radiation (115-400 nm) for a range of initial CO$_{2}$/CH$_{4}$/O$_{2}$ mixing ratios (O$_{2}$ ranging from 2 ppm to 0.2\%). At the lowest O$_{2}$ concentration (2 ppm), the addition increased particle production for all but one gas mixture. At higher oxygen concentrations (20 ppm and greater) particles are still produced, but the addition of O$_{2}$ decreases the production rate. Both the particle size and number density decrease with increasing O$_{2}$, indicating that O$_{2}$ affects particle nucleation and growth. The particle density increases with increasing O$_{2}$. The addition of CO$_{2}$ and O$_{2}$ not only increases the amount of oxygen in the aerosol, but it also increases the degree of nitrogen incorporation. In particular, the addition of O$_{2}$ results in the formation of nitrate bearing molecules. The fact that the presence of oxygen bearing molecules increases the efficiency of nitrogen fixation has implications for the role of haze as a source of molecules required for the origin and evolution of life. The composition changes also likely affect the absorption and scattering behavior of these particles but optical properties measurements are required to fully understand the implications for the effect on the planetary radiative energy balance and climate.Comment: 15 pages, 3 tables, 8 figures, accepted in Astrophysical Journa

Did melting glaciers cause volcanic eruptions in eastern California? Probing the mechanics of dike formation

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/94661/1/jgrb14086.pd

Coupling between downstream variations of channel width and local pool–riffle bed topography

A potential control of downstream channel width variations on the structure and planform of pool–riffle sequence local bed topography is a key to the dynamics of gravel bed rivers. How established pool–riffle sequences respond to time-varying changes in channel width at specific locations, however, is largely unexplored and challenging to address with field-based study. Here, we report results of a flume experiment aimed at building understanding of how statistically steady pool–riffle sequence profiles adjust to spatially prescribed channel width changes. We find that local bed slopes near steady-state conditions inversely correlate with local downstream width gradients when the upstream sediment supply approximates the estimated transport capacity. This result constrains conditions prior to and following the imposed local width changes. Furthermore, this relationship between local channel bed slope and downstream width gradient is consistent with expectations from scaling theory and a broad set of field-based, numerical, and experimental studies (n=88). However, upstream disruptions to coarse sediment supply through actions such as dam removal can result in a transient flipping of the expected inverse correlation between bed slope and width gradient, collectively highlighting that understanding local conditions is critical before typically implemented spatial averaging schemes can be reliably applied.Postprint (published version

A New Volcanic Stratospheric Sulfate Aerosol Forcing Emulator (EVA_H): Comparison With Interactive Stratospheric Aerosol Models

Idealized models or emulators of volcanic aerosol forcing have been widely used to reconstruct the spatiotemporal evolution of past volcanic forcing. However, existing models, including the most recently developed Easy Volcanic Aerosol (EVA; Toohey et al., doi: 10.5194/gmd‐2016‐83), (i) do not account for the height of injection of volcanic SO urn:x-wiley:jgrd:media:jgrd55987:jgrd55987-math-0001; (ii) prescribe a vertical structure for the forcing; and (iii) are often calibrated against a single eruption. We present a new idealized model, EVA_H, that addresses these limitations. Compared to EVA, EVA_H makes predictions of the global mean stratospheric aerosol optical depth that are (i) similar for the 1979–1998 period characterized by the large and high‐altitude tropical SO urn:x-wiley:jgrd:media:jgrd55987:jgrd55987-math-0002 injections of El Chichón (1982) and Mount Pinatubo (1991); (ii) significantly improved for the 1998–2015 period characterized by smaller eruptions with a large variety of injection latitudes and heights. Compared to EVA, the sensitivity of volcanic forcing to injection latitude and height in EVA_H is much more consistent with results from climate models that include interactive aerosol chemistry and microphysics, even though EVA_H remains less sensitive to eruption latitude than the latter models. We apply EVA_H to investigate potential biases and uncertainties in EVA‐based volcanic forcing data sets from phase 6 of the Coupled Model Intercomparison Project (CMIP6). EVA and EVA_H forcing reconstructions do not significantly differ for tropical high‐altitude volcanic injections. However, for high‐latitude or low‐altitude injections, our reconstructed forcing is significantly lower. This suggests that volcanic forcing in CMIP6 last millenium experiments may be overestimated for such eruptions

A new volcanic stratospheric sulfate aerosol forcing emulator (EVA_H): Comparison with interactive stratospheric aerosol models.

Idealized models or emulators of volcanic aerosol forcing have been widely used to reconstruct the spatio‐temporal evolution of past volcanic forcing. However, existing models, including the most recently developed Easy Volcanic Aerosol (EVA, Toohey et al. (2016): i) do not account for the height of injection of volcanic SO2; ii) prescribe a vertical structure for the forcing; and iii) are \NEW{often} calibrated against a single eruption. We present a new idealized model, EVA_H, that addresses these limitations. Compared to EVA, EVA_H makes predictions of the global mean stratospheric aerosol optical depth that are: i) similar for the 1979‐1998 period characterized by the large and high‐altitude tropical SO2 injections of El Chichón (1982) and Mt. Pinatubo (1991); ii) significantly improved for the 1998‐2015 period characterized by smaller eruptions with a large variety of injection latitudes and heights. Compared to EVA, the sensitivity of volcanic forcing to injection latitude and height in EVA_H is much more consistent with results from climate models that include interactive aerosol chemistry and microphysics, even though EVA_H remain less sensitive to eruption latitude than the latter models. We apply EVA_H to investigate potential biases and uncertainties in EVA‐based volcanic forcing datasets from phase 6 of the Coupled Model Intercomparison Project (CMIP6). EVA and EVA_H forcing reconstructions do not significantly differ for tropical high‐altitude volcanic injections. However, for high‐latitude or low altitude injections, our reconstructed forcing is significantly lower. This suggests that volcanic forcing in CMIP6 last millenium experiments may be overestimated for such eruptions.Includes NERC

New insights into the relationship between mass eruption rate and volcanic column height based on the IVESPA data set

Rapid and simple estimation of the mass eruption rate (MER) from column height is essential for real-time volcanic hazard management and reconstruction of past explosive eruptions. Using 134 eruptive events from the new Independent Volcanic Eruption Source Parameter Archive (IVESPA, v1.0), we explore empirical MER-height relationships for four measures of column height: spreading level, sulfur dioxide height, and top height from direct observations and as reconstructed from deposits. These relationships show significant differences and highlight limitations of empirical models currently used in operational and research applications. The roles of atmospheric stratification, wind, and humidity remain challenging to detect across the wide range of eruptive conditions spanned in IVESPA, ultimately resulting in empirical relationships outperforming analytical models that account for atmospheric conditions. This finding highlights challenges in constraining the MER-height relation using heterogeneous observations and empirical models, which reinforces the need for improved eruption source parameter data sets and physics-based models

New Insights Into the Relationship Between Mass Eruption Rate and Volcanic Column Height Based On the IVESPA Data Set

Rapid and simple estimation of the mass eruption rate (MER) from column height is essential for real-time volcanic hazard management and reconstruction of past explosive eruptions. Using 134 eruptive events from the new Independent Volcanic Eruption Source Parameter Archive (IVESPA, v1.0), we explore empirical MER-height relationships for four measures of column height: spreading level, sulfur dioxide height, and top height from direct observations and as reconstructed from deposits. These relationships show significant differences and highlight limitations of empirical models currently used in operational and research applications. The roles of atmospheric stratification, wind, and humidity remain challenging to detect across the wide range of eruptive conditions spanned in IVESPA, ultimately resulting in empirical relationships outperforming analytical models that account for atmospheric conditions. This finding highlights challenges in constraining the MER-height relation using heterogeneous observations and empirical models, which reinforces the need for improved eruption source parameter data sets and physics-based models

Broad-spectrum aptamer inhibitors of HIV reverse transcriptase closely mimic natural substrates

A detailed understanding of how aptamers recognize biological binding partners is of considerable importance in the development of oligonucleotide therapeutics. For antiviral nucleic acid aptamers, current models predict a correlation between broad-spectrum inhibition of viral proteins and suppression of emerging viral resistance, but there is little understanding of how aptamer structures contribute to recognition specificity. We previously established that two independent single-stranded DNA aptamers, R1T and RT1t49(−5), are potent inhibitors of reverse transcriptases (RTs) from diverse branches of the primate lentiviral family, including HIV-1, HIV-2 and SIV(cpz). In contrast, class 1 RNA pseudoknots, such as aptamer T1.1, are specific for RTs from only a few viral clades. Here, we map the binding interfaces of complexes formed between RT and aptamers R1T, RT1t49(−5) and T1.1, using mass spectrometry-based protein footprinting of RT and hydroxyl radical footprinting of the aptamers. These complementary methods reveal that the broad-spectrum aptamers make contacts throughout the primer-template binding cleft of RT. The double-stranded stems of these aptamers closely mimic natural substrates near the RNase H domain, while their binding within the polymerase domain significantly differs from RT substrates. These results inform our perspective on how sustained, broad-spectrum inhibition of RT can be achieved by aptamers

Volcanic tremors and magma wagging: gas flux interactions and forcing mechanism

International audienceVolcanic tremor is an important precursor to explosive eruptions and is ubiquitous across most silicic volcanic systems. Oscillations can persist for days and occur in a remarkably narrow frequency band (i.e. 0.5–7 Hz). The recently proposed magma-wagging model of Jellinek & Bercovici provides a basic explanation for the emergence and frequency evolution of tremor that is consistent with observations of many active silicic and andesitic volcanic systems. This model builds on work suggesting that the magma column rising in the volcanic conduit is surrounded by a permeable vesicular annulus of sheared bubbles. The magma-wagging model stipulates that the magma column rattles within the spring like foam of the annulus, and predicts oscillations at the range of observed tremor frequencies for a wide variety of volcanic environments. However, the viscous resistance of the magma column attenuates the oscillations and thus a forcing mechanism is required. Here we provide further development of the magma-wagging model and demonstrate that it implicitly has the requisite forcing to excite wagging behaviour. In particular, the extended model allows for gas flux through the annulus, which interacts with the wagging displacements and induces a Bernoulli effect that amplifies the oscillations. This effect leads to an instability involving growing oscillations at the lower end of the tremor frequency spectrum, and that drives the system against viscous damping of the wagging magma column. The fully non-linear model displays tremor oscillations associated with pulses in gas flux, analogous to observations of audible ‘chugging’. These oscillations also occur in clusters or envelopes that are consistent with observations of sporadic tremor envelopes. The wagging model further accurately predicts that seismic signals on opposite sides of a volcano are out of phase by approximately half a wagging or tremor period. Finally, peaks in gas flux occur at the end of the growing instability several tens of seconds after the largest tremors, which is consistent with observations of a 30- to 50-s lag between major tremor activity and maximum gas release. The extended magma-wagging model, thus, predicts tremor frequency and its evolution before and during an eruption, as well as a driving mechanism to keep the tremor excited for long periods

Morphodynamics of a width-variable gravel bed stream: new insights on pool-riffle formation from physical experiments

Field observations, experiments, and numerical simulations suggest that pool-riffles along gravel bed mountain streams develop due to downstream variations of channel width. Where channels narrow, pools are observed, and at locations of widening, riffles occur. Based on previous work, we hypothesize that the bed profile is coupled to downstream width variations through momentum fluxes imparted to the channel surface, which scale with downstream changes of flow velocity. We address this hypothesis with flume experiments understood through scaling theory. Our experiments produce pool-riffle like structures across average Shields stresses t* that are a factor 1.5–2 above the threshold mobility condition of the experimental grain size distribution. Local topographic responses are coupled to channel width changes, which drive flows to accelerate or decelerate on average, for narrowing and widening, respectively. We develop theory which explains the topography-width-velocity coupling as a ratio of two reinforcing timescales. The first timescale captures the time necessary to do work to the channel bed. The second timescale characterizes the relative time magnitude of momentum transfer from the flowing fluid to the channel bed surface. Riffle-like structures develop where the work and momentum timescales are relatively large, and pools form where the two timescales are relatively small. We show that this result helps to explain local channel bed slopes along pool-riffles for five data sets representing experimental, numerical, and natural cases, which span 2 orders of magnitude of reach-averaged slope. Additional model testing is warranted.Peer Reviewe