Distribution and sighting frequency of reef fishes in the Florida Keys National Marine Sanctuary

This study analyzed species richness, distribution, and sighting frequency of selected reef fishes to describe species assemblage composition, abundance, and spatial distribution patterns among sites and regions (Upper Keys, Middle Keys, Lower Keys, and Dry Tortugas) within the Florida Keys National Marine Sanctuary (FKNMS) barrier reef ecosystem. Data were obtained from the Reef Environmental Education Foundation (REEF) Fish Survey Project, a volunteer fish-monitoring program. A total of 4,324 visual fish surveys conducted at 112 sites throughout the FKNMS were used in these analyses. The data set contained sighting information on 341 fish species comprising 68 families. Species richness was generally highest in the Upper Keys sites (maximum was 220 species at Molasses Reef) and lowest in the Dry Tortugas sites. Encounter rates differed among regions, with the Dry Tortugas having the highest rate, potentially a result of differences in the evenness in fishes and the lower diversity of habitat types in the Dry Tortugas region. Geographic coverage maps were developed for 29 frequently observed species. Fourteen of these species showed significant regional variation in mean sighting frequency (%SF). Six species had significantly lower mean %SF and eight species had significantly higher mean %SF in the Dry Tortugas compared with other regions. Hierarchical clustering based on species composition (presence-absence) and species % SF revealed interesting patterns of similarities among sites that varied across spatial scales. Results presented here indicate that phenomena affecting reef fish composition in the FKNMS operate at multiple spatial scales, including a biogeographic scale that defines the character of the region as a whole, a reef scale (~50-100 km) that include meso-scale physical oceanographic processes and regional variation in reef structure and associated reef habitats, and a local scale that includes level of protection, cross-shelf location and a suite of physical characteristics of a given reef. It is likely that at both regional and local scales, species habitat requirements strongly influence the patterns revealed in this study, and are particularly limiting for species that are less frequently observed in the Dry Tortugas. The results of this report serve as a benchmark for the current status of the reef fishes in the FKNMS. In addition, these data provide the basis for analyses on reserve effects and the biogeographic coupling of benthic habitats and fish assemblages that are currently underway. (PDF contains 61 pages.

Cooperative Origin of Low-Density Domains in Liquid Water

We study the size of clusters formed by water molecules possessing large enough tetrahedrality with respect to their nearest neighbors. Using Monte Carlo simulation of the SPC/E model of water, together with a geometric analysis based on Voronoi tessellation, we find that regions of lower density than the bulk are formed by accretion of molecules into clusters exceeding a minimum size. Clusters are predominantly linear objects and become less compact as they grow until they reach a size beyond which further accretion is not accompanied by a density decrease. The results suggest that the formation of "ice-like" regions in liquid water is cooperative.Comment: 16 pages, 6 figure

Measuring Galaxy Environments with Deep Redshift Surveys

We study the applicability of several galaxy environment measures (n^th-nearest-neighbor distance, counts in an aperture, and Voronoi volume) within deep redshift surveys. Mock galaxy catalogs are employed to mimic representative photometric and spectroscopic surveys at high redshift (z ~ 1). We investigate the effects of survey edges, redshift precision, redshift-space distortions, and target selection upon each environment measure. We find that even optimistic photometric redshift errors (\sigma_z = 0.02) smear out the line-of-sight galaxy distribution irretrievably on small scales; this significantly limits the application of photometric redshift surveys to environment studies. Edges and holes in a survey field dramatically affect the estimation of environment, with the impact of edge effects depending upon the adopted environment measure. These edge effects considerably limit the usefulness of smaller survey fields (e.g. the GOODS fields) for studies of galaxy environment. In even the poorest groups and clusters, redshift-space distortions limit the effectiveness of each environment statistic; measuring density in projection (e.g. using counts in a cylindrical aperture or a projected n^th-nearest-neighbor distance measure) significantly improves the accuracy of measures in such over-dense environments. For the DEEP2 Galaxy Redshift Survey, we conclude that among the environment estimators tested the projected n^th-nearest-neighbor distance measure provides the most accurate estimate of local galaxy density over a continuous and broad range of scales.Comment: 17 pages including 16 figures, accepted to Ap

Sexually transmitted diseases and infertility

Female infertility, including tubal factor infertility, is a major public health concern worldwide. Most cases of tubal factor infertility are attributable to untreated sexually transmitted diseases that ascend along the reproductive tract and are capable of causing tubal inflammation, damage, and scarring. Evidence has consistently demonstrated the effects of Chlamydia trachomatis and Neisseria gonorrhoeae as pathogenic bacteria involved in reproductive tract morbidities including tubal factor infertility and pelvic inflammatory disease. There is limited evidence in the medical literature that other sexually transmitted organisms, including Mycoplasma genitalium, Trichomonas vaginalis, and other microorganisms within the vaginal microbiome, may be important factors involved in the pathology of infertility. Further investigation into the vaginal microbiome and other potential pathogens is necessary to identify preventable causes of tubal factor infertility. Improved clinical screening and prevention of ascending infection may provide a solution to the persistent burden of infertility

Remote sensing and geologic studies of the orientale basin region

Both visual and near-infrared spectral observations are combined with multispectral imaging to study the Orientale interior and exterior, the Cruger region, Grimaldi Region, the Schiller-Schickard Region, and the Humorum Region of the Moon. It was concluded that anorthosites occur in the Inner Rook Mountains of Orientale, the inner ring of Grimaldi, and the main ring of Humorum. Imaging spectroscopy shows that the entire eastern Inner Rook Mountains are composed of anorthosites. Orientale ejecta are strikingly like the surface materials in the region where Apollo 16 landed. This similarity indicates similar mineralogy, i.e., noritic anorthosite. Thus, Orientile ejecta is more mafic than the Inner Rook Mountains. This situation is also true for the Nectaris, Humorum, and Gramaldi basins. Isolated areas of the Orientale region show the presence of gabbroic rocks, but, in general, Orientale ejecta are noritic anorthosites, which contain much more low-Ca pyroxene than high-Ca pyroxene. Ancient (pre-Orientale) mare volcanism apparently occurred in several areas of the western limb

Perspective: How good is DFT for water?

Kohn-Sham density functional theory (DFT) has become established as an indispensable tool for investigating aqueous systems of all kinds, including those important in chemistry, surface science, biology and the earth sciences. Nevertheless, many widely used approximations for the exchange-correlation (XC) functional describe the properties of pure water systems with an accuracy that is not fully satisfactory. The explicit inclusion of dispersion interactions generally improves the description, but there remain large disagreements between the predictions of different dispersion-inclusive methods. We present here a review of DFT work on water clusters, ice structures and liquid water, with the aim of elucidating how the strengths and weaknesses of different XC approximations manifest themselves across this variety of water systems. Our review highlights the crucial role of dispersion in describing the delicate balance between compact and extended structures of many different water systems, including the liquid. By referring to a wide range of published work, we argue that the correct description of exchange-overlap interactions is also extremely important, so that the choice of semi-local or hybrid functional employed in dispersion-inclusive methods is crucial. The origins and consequences of beyond-2-body errors of approximate XC functionals are noted, and we also discuss the substantial differences between different representations of dispersion. We propose a simple numerical scoring system that rates the performance of different XC functionals in describing water systems, and we suggest possible future developments

Mitral Annular and Coronary Artery Calcification Are Associated with Mortality in HIV-Infected Individuals.

BackgroundHIV infection increases cardiovascular risk. Coronary artery calcification (CAC) and mitral annular calcification (MAC) identify patients at risk for cardiovascular disease (CVD). The purpose of this study was to examine the association between MAC, CAC and mortality in HIV-infected individuals.Methods and resultsWe studied 152 asymptomatic HIV-infected individuals with transthoracic echocardiography (TTE) and computed tomography (CT). MAC was identified on TTE using standardized criteria. Presence of CAC, CAC score and CAC percentiles were determined using the modified Agatston criteria. Mortality data was obtained from the Social Security and National Death Indices (SSDI/NDI). The median age was 49 years; 87% were male. The median duration of HIV was 16 years; 84% took antiretroviral therapy; 64% had an undetectable viral load. CVD risk factors included hypertension (35%), smoking (62%) and dyslipidemia (35%). Twenty-five percent of individuals had MAC, and 42% had CAC. Over a median follow-up of 8 years, 11 subjects died. Subjects with CAC had significantly higher mortality compared to those with MAC only or no MAC. The Harrell's C-statistic of CAC was 0.66 and increased to 0.75 when MAC was added (p = 0.05). MAC, prior CVD, age and HIV viral load were independently associated with higher age- and gender-adjusted CAC percentiles in an adjusted model (p < 0.05 for all).ConclusionIn HIV patients, the presence of MAC, traditional risk factors and HIV viral load were independently associated with CAC. Presence of CAC and MAC may be useful in identifying HIV-infected individuals at higher risk for death

Minimum Renyi and Wehrl entropies at the output of bosonic channels

The minimum Renyi and Wehrl output entropies are found for bosonic channels in which the signal photons are either randomly displaced by a Gaussian distribution (classical-noise channel), or in which they are coupled to a thermal environment through lossy propagation (thermal-noise channel). It is shown that the Renyi output entropies of integer orders z>1 and the output Wehrl entropy are minimized when the channel input is a coherent state.Comment: Minimal revision. Accepted for publication on Phys. Rev.

Germplasm and Cultivar Development

Cool-season forage grasses have evolved, and continue to evolve, in natural ecosystems subject to environmental factors both in the presence and absence of human influences. The literature often lacks facts describing the evolution and domestication of forage grasses. Furthermore, the literature on this subject mainly deals with evolution of species in the broad scope, i.e., on a scale of hundreds of thousands or millions or years. Thus, some of our conclusions are necessarily speculative and are highly subject to the nature of the research that has been reported. We describe the forces of selection that act upon cool-season forage grasses and attempt to place each in historical perspective and in relation to each other. Because most economically important cool-season forage grasses are perennial, our principal focus will be on perennial species. There has been very little effort to quantify economic values of selection criteria or to empirically compare different breeding procedures in cool-season forage grasses. We attempt to summarize and compare some of the more important and thoroughly reported approaches used since the advent of formal breeding strategies in the late nineteenth and early twentieth centuries. These selection criteria and breeding procedures are as varied as the individual researchers who developed them. Examples are cited to illustrate principles and phenomena of historical or practical importance. More details of the agriculturally important species are discussed in the later chapters of this book. Space limitations prevent us from developing a thorough review, but we cite earlier reviews that thoroughly cover the first few decades of formal cool-season forage grass breeding. We also have summarized the limited amount of research on cool-season forage grasses where attempts have been made to use new technologies for hybridization, tissue culture, and genetic markers. Many of these techniques were first developed using other species and later adapted to cool-season forage grasses. Many are still undergoing rapid development and modification to allow more efficient use in breeding programs. Together they have had little practical impact on cool-season forage grass cultivars, but appear to offer considerable promise for creating new genetic variability and more efficient breeding procedures