Spread of the invasive alga Caulerpa racemosa var. cylindracea (Caulerpales, Chlorophyta) along the Mediterranean Coast of the Murcia region (SE Spain)

The aim of this paper was to document the appearance and spread of the green alga Caulerpa racemosa along the coast of Murcia in south–eastern Spain. It was found for the first time in the area in 2005 and over the next two years the number of new sightings increased almost exponentially. In the period 2005–2007 the total surface area colonised by the alga in the region was estimated to be at least 265 ha. Benthic assemblages colonised by the alga were rocky bottoms with photophilic algae, dead P. oceanica rhizomes, infralittoral and circalittoral soft bottoms and maerl beds. No penetration of the alga was observed in P. oceanica meadows, except in one locality. Biometric analysis indicated high vegetative development in the established colonies in comparison to those described in other Mediterranean areas. Rapid spreading dynamics observed in the Murcia region is a potential threat for native benthic communities. Key words: Biological invasions, Caulerpa racemosa var. cylindracea, Colonised surface area, Distribution, Mediterranean Sea, Spain.En el presente trabajo se documenta la aparición y dispersión del alga verde Caulerpa racemosa a lo largo de la costa de Murcia, región situada en el sureste español. El alga fue detectada por primera vez en el año 2005 y durante los dos años consecutivos se observó un crecimiento casi exponencial en el número de áreas colonizadas. La superficie total colonizada por el alga en Murcia durante el periodo 2005–2007 ha sido estimada en 265 ha., siendo las comunidades bentónicas afectadas algas fotófilas sobre sustrato rocoso, "mata muerta" de P. oceanica, fondos blandos infralitorales y circalitorales y fondos con comunidades de maërl. La presencia del alga dentro de praderas de P. oceanica solamente fue detectada en una localidad. Los estudios biométricos realizados muestran un elevado desarrollo vegetativo de las poblaciones de C. racemosa en Murcia en comparación con colonias de otras áreas del Mediterráneo, siendo esta rápida dinámica de expansión una amenaza potencial para las comunidades bentonicas nativas. Palabras clave: Invasiones biológicas, Caulerpa racemosa var. cylindracea, Superficie colonizada, Mar Mediterraneo, España.The aim of this paper was to document the appearance and spread of the green alga Caulerpa racemosa along the coast of Murcia in south–eastern Spain. It was found for the first time in the area in 2005 and over the next two years the number of new sightings increased almost exponentially. In the period 2005–2007 the total surface area colonised by the alga in the region was estimated to be at least 265 ha. Benthic assemblages colonised by the alga were rocky bottoms with photophilic algae, dead P. oceanica rhizomes, infralittoral and circalittoral soft bottoms and maerl beds. No penetration of the alga was observed in P. oceanica meadows, except in one locality. Biometric analysis indicated high vegetative development in the established colonies in comparison to those described in other Mediterranean areas. Rapid spreading dynamics observed in the Murcia region is a potential threat for native benthic communities. Key words: Biological invasions, Caulerpa racemosa var. cylindracea, Colonised surface area, Distribution, Mediterranean Sea, Spain

La formación radiolarítica Jarropa: definición y significado en el Jurásico Subbético (Cordillera Bética)

The Jarropa Radiolarite Formation is defined formally, for the first time, according to the international guide of stratigraphic nomenclature, and the holostratotype and two parastratotypes are described. This is a very characteristic Jurassic unit of the Subbetic (Betic Cordillera) in which point out the presence of radiolarite levels, together with siliceous marlstones, marls and clays. Two members are differentiated: a lower member of green, radiolarites and siliceous marls, and an upper member of red, siliceous clays and marls, both being recognizable in most of the outcrops. The age of this formation in the holostratotype, known mainly from the study of their radiolarians, is Late Callovian-Oxfordian. In other stratigraphic sections (including some parastratotype) is verified that the exact age of the bottom of the formation, and of the boundary between the two before described members are heterochronous, within the Uppermost Bajocian-Lowermost Kimmeridgian. They are pelagic sediments, deposited during the expansive phase of the Southern Iberian Continental Paleomargin, in areas far from the continent with thin continental crust. They have a great analogy with deposits outcropping in others Mediterranean Alpine domains (Apennines, Alps, Dinarids, etc.) also accumulated during Jurassic extensive phases of continental margins adjacent to the Tethys. The depositional bathymetry is estimated in a few hundreds of meters, without a necessary relation with the calcite compensation depth (CCD).Se define formalmente, por primera vez, la «Formación Radiolarítica Jarropa» de acuerdo con las normas internacionales de nomenclatura estratigráfica, y se describen el holoestratotipo y dos paraestratotipos. Se trata de una unidad litoestratigráfica muy característica del Jurásico del Subbético (Cordillera Bética) en la que destacan la presencia de niveles de radiolaritas, junto con margas y arcillas silíceas. Se diferencian dos miembros, uno inferior («miembro de radiolaritas y margas silíceas, verdes») y otro superior («miembro de arcillas y margas silíceas, rojas»), ambos reconocibles en la mayoría de los afloramientos. La edad de esta formación en el holoestratotipo, conocida a partir del estudio de los radiolarios, es Calloviense superior-Oxfordiense. Se constata que las edades del muro de la formación y del límite entre los dos miembros, en otras secciones estratigráficas son diferentes mostrando un carácter claramente heterócrono, dentro del intervalo Bajociense terminal-Kimmeridgiense basal. Se trata de sedimentos pelágicos, depositados en áreas alejadas del continente, durante la fase expansiva del margen continental sudibérico, con sustrato de corteza continental. Presentan una gran analogía con materiales que aparecen en diferentes dominios alpinos mediterráneos (Apeninos, Alpes, Dinárides, etc.) también depositados, durante el Jurásico, en fases de expansión de márgenes continentales adyacentes al Tethys. La batimetría de su depósito se estima en pocos centenares de metros, sin una necesaria relación con el nivel de compensación de la calcita (CCD)

18S-NemaBase: Curated 18S rRNA Database of Nematode Sequences

Nematodes are the most abundant and diverse animals on the planet but lack representation in biodiversity research. This presents a problem for studying nematode diversity, particularly when molecular tools (i.e., barcoding and metabarcoding) rely on well-populated and curated reference databases, which are absent for nematodes. To improve molecular identification and the assessment of nematode diversity, we created and curated an 18S rRNA database specific to nematodes (18S-NemaBase) using sequences sourced from the most recent publicly available 18S rRNA SILVA v138 database. As part of the curation process, taxonomic strings were standardized to contain a fixed number of taxonomic ranks relevant to nematology and updated for the most recent accepted nematode classifications. In addition, apparent erroneous sequences were removed. To test the efficacy and accuracy of 18S-NemaBase, we compared it to an older but also curated SILVA v111 and the newest SILVA v138 by assigning taxonomies and analyzing the diversity of a nematode dataset from the Western Nebraska Sandhills. We showed that 18S-NemaBase provided more accurate taxonomic assignments and diversity assessments than either version of SILVA, with a much easier workflow and no need for manual corrections. Additionally, observed diversity further improved when 18S-NemaBase was supplemented with reference sequences from nematodes present in the study site. Although the 18S-NemaBase is a step in the right direction, a concerted effort to increase the number of high-quality, accessible, full-length nematode reference sequences is more important now than ever

18S-NemaBase: Curated 18S rRNA Database of Nematode Sequences

Nematodes are the most abundant and diverse animals on the planet but lack representation in biodiversity research. This presents a problem for studying nematode diversity, particularly when molecular tools (i.e., barcoding and metabarcoding) rely on well-populated and curated reference databases, which are absent for nematodes. To improve molecular identification and the assessment of nematode diversity, we created and curated an 18S rRNA database specific to nematodes (18S-NemaBase) using sequences sourced from the most recent publicly available 18S rRNA SILVA v138 database. As part of the curation process, taxonomic strings were standardized to contain a fixed number of taxonomic ranks relevant to nematology and updated for the most recent accepted nematode classifications. In addition, apparent erroneous sequences were removed. To test the efficacy and accuracy of 18S-NemaBase, we compared it to an older but also curated SILVA v111 and the newest SILVA v138 by assigning taxonomies and analyzing the diversity of a nematode dataset from the Western Nebraska Sandhills. We showed that 18S-NemaBase provided more accurate taxonomic assignments and diversity assessments than either version of SILVA, with a much easier workflow and no need for manual corrections. Additionally, observed diversity further improved when 18S-NemaBase was supplemented with reference sequences from nematodes present in the study site. Although the 18S-NemaBase is a step in the right direction, a concerted effort to increase the number of high-quality, accessible, full-length nematode reference sequences is more important now than ever

The modulation of leaf metabolism plays a role in salt tolerance of Cymodocea nodosa exposed to hypersaline stress in mesocosms

Applying proteomics, we tested the physiological responses of the euryhaline seagrass Cymodocea nodosa to deliberate manipulation of salinity in a mesocosm system. Plants were subjected to a chronic hypersaline condition (43 psu) to compare protein expression and plant photochemistry responses after 15 and 30 days of exposure with those of plants cultured under normal/ambient saline conditions (37 psu). Results showed a general decline in the expression level of leaf proteins in hypersaline stressed plants, with more intense reductions after long-lasting exposure. Specifically, the carbon-fixing enzyme RuBisCo displayed a lower accumulation level in stressed plants relative to controls. In contrast, the key enzymes involved in the regulation of glycolysis, cytosolic glyceraldehyde-3-phosphate dehydrogenase, enolase 2 and triose-phosphate isomerase, showed significantly higher accumulation levels. These responses suggested a shift in carbon metabolism in stressed plants. Hypersaline stress also induced a significant alteration of the photosynthetic physiology of C. nodosa by means of a downregulation in structural proteins and enzymes of both PSII and PSI. However we found an over-expression of the cytochrome b559 alpha subunit of the PSII initial complex, which is a receptor for the PSII core proteins involved in biogenesis or repair processes and therefore potentially involved in the absence of effects at the photochemical level of stressed plants. As expected hypersalinity also affects vacuolar metabolism by increasing the leaf cell turgor pressure and enhancing the up-take of Na+ by overaccumulating the tonoplast specific intrinsic protein pyrophosphate-energized inorganic pyrophosphatase (H(+)-PPase) coupled to the Na+/H+-antiporter. The modulation of carbon metabolism and the enhancement of vacuole capacity in Na+ sequestration and osmolarity changes are discussed in relation to salt tolerance of C. nodosa.Postprin

Dietary antioxidants protect gut epithelial cells from oxidant-induced apoptosis

BACKGROUND: The potential of ascorbic acid and two botanical decoctions, green tea and cat's claw, to limit cell death in response to oxidants were evaluated in vitro. METHODS: Cultured human gastric epithelial cells (AGS) or murine small intestinal epithelial cells (IEC-18) were exposed to oxidants – DPPH (3 μM), H(2)O(2) (50 μM), peroxynitrite (300 μM) – followed by incubation for 24 hours, with antioxidants (10 μg/ml) administered as a 1 hour pretreatment. Cell number (MTT assay) and death via apoptosis or necrosis (ELISA, LDH release) was determined. The direct interactions between antioxidants and DPPH (100 μM) or H(2)O(2) (50 μM) were evaluated by spectroscopy. RESULTS: The decoctions did not interact with H(2)O(2), but quenched DPPH although less effectively than vitamin C. In contrast, vitamin C was significantly less effective in protecting human gastric epithelial cells (AGS) from apoptosis induced by DPPH, peroxynitrite and H(2)O(2) (P < 0.001). Green tea and cat's claw were equally protective against peroxynitrite and H(2)O(2), but green tea was more effective than cat's claw in reducing DPPH-induced apoptosis (P < 0.01). Necrotic cell death was marginally evident at these low concentrations of peroxynitrite and H(2)O(2), and was attenuated both by cat's claw and green tea (P < 0.01). In IEC-18 cells, all antioxidants were equally effective as anti-apoptotic agents. CONCLUSIONS: These results indicate that dietary antioxidants can limit epithelial cell death in response to oxidant stress. In the case of green tea and cat's claw, the cytoprotective response exceed their inherent ability to interact with the injurious oxidant, suggestive of actions on intracellular pathways regulating cell death

VAMOS: a Pathfinder for the HAWC Gamma-Ray Observatory

VAMOS was a prototype detector built in 2011 at an altitude of 4100m a.s.l. in the state of Puebla, Mexico. The aim of VAMOS was to finalize the design, construction techniques and data acquisition system of the HAWC observatory. HAWC is an air-shower array currently under construction at the same site of VAMOS with the purpose to study the TeV sky. The VAMOS setup included six water Cherenkov detectors and two different data acquisition systems. It was in operation between October 2011 and May 2012 with an average live time of 30%. Besides the scientific verification purposes, the eight months of data were used to obtain the results presented in this paper: the detector response to the Forbush decrease of March 2012, and the analysis of possible emission, at energies above 30 GeV, for long gamma-ray bursts GRB111016B and GRB120328B.Comment: Accepted for pubblication in Astroparticle Physics Journal (20 pages, 10 figures). Corresponding authors: A.Marinelli and D.Zaboro

Nitrogen uptake and internal recycling in Zostera marina exposed to oyster farming: eelgrass potential as a natural biofilter

Oyster farming in estuaries and coastal lagoons frequently overlaps with the distribution of seagrass meadows, yet there are few studies on how this aquaculture practice affects seagrass physiology. We compared in situ nitrogen uptake and the productivity of Zostera marina shoots growing near off-bottom longlines and at a site not affected by oyster farming in San Quintin Bay, a coastal lagoon in Baja California, Mexico. We used benthic chambers to measure leaf NH4 (+) uptake capacities by pulse labeling with (NH4)-N-15 (+) and plant photosynthesis and respiration. The internal N-15 resorption/recycling was measured in shoots 2 weeks after incubations. The natural isotopic composition of eelgrass tissues and vegetative descriptors were also examined. Plants growing at the oyster farming site showed a higher leaf NH4 (+) uptake rate (33.1 mmol NH4 (+) m(-2) day(-1)) relative to those not exposed to oyster cultures (25.6 mmol NH4 (+) m(-2) day(-1)). We calculated that an eelgrass meadow of 15-16 ha (which represents only about 3-4 % of the subtidal eelgrass meadow cover in the western arm of the lagoon) can potentially incorporate the total amount of NH4 (+) excreted by oysters (similar to 5.2 x 10(6) mmol NH4 (+) day(-1)). This highlights the potential of eelgrass to act as a natural biofilter for the NH4 (+) produced by oyster farming. Shoots exposed to oysters were more efficient in re-utilizing the internal N-15 into the growth of new leaf tissues or to translocate it to belowground tissues. Photosynthetic rates were greater in shoots exposed to oysters, which is consistent with higher NH4 (+) uptake and less negative delta C-13 values. Vegetative production (shoot size, leaf growth) was also higher in these shoots. Aboveground/belowground biomass ratio was lower in eelgrass beds not directly influenced by oyster farms, likely related to the higher investment in belowground biomass to incorporate sedimentary nutrients