Concepts in bio-molecular spectroscopy: vibrational case studies on metalloenzymes

Spectroscopic techniques play a major role in the elucidation of structure-function relationships of biological macromolecules. Here we describe an integrated approach for bio-molecular spectroscopy that takes into account the special characteristics of such compounds. The underlying fundamental concepts will be exemplarily illustrated by means of selected case studies on biocatalysts, namely hydrogenase and superoxide reductase. The treatise will be concluded with an overview of challenges and future prospects, laying emphasis on functional dynamics, in vivo studies, and computational spectroscopy.DFG, EXC 314, Unifying Concepts in Catalysi

NAD(H)-coupled hydrogen cycling - structure-function relationships of bidirectional [NiFe] hydrogenases

Hydrogenases catalyze the activation or production of molecular hydrogen. Due to their potential importance for future biotechnological applications, these enzymes have been in the focus of intense research for the past decades. Bidirectional [NiFe] hydrogenases are of particular interest as they couple the reversible cleavage of hydrogen to the redox conversion of NAD(H). In this account, we review the current state of knowledge about mechanistic aspects and structural determinants of these complex multi-cofactor enzymes. Special emphasis is laid on the oxygen-tolerant NAD(H)-linked bidirectional [NiFe] hydrogenase from Ralstonia eutropha. (C) 2011 Federation of European Biochemical Societies. Published by Elsevier B. V. All rights reserved

Insights into the structure of the active site of the O-2-tolerant membrane bound [NiFe] hydrogenase of R. eutropha H16 by molecular modelling

Dieser Beitrag ist mit Zustimmung des Rechteinhabers aufgrund einer (DFG geförderten) Allianz- bzw. Nationallizenz frei zugänglich.This publication is with permission of the rights owner freely accessible due to an Alliance licence and a national licence (funded by the DFG, German Research Foundation) respectively.Structural models for the Ni-B state of the wild-type and C81S protein variant of the membrane-bound [NiFe] hydrogenase from Ralstonia eutrophaH16 were derived by applying the homology model technique combined with molecular simulations and a hybrid quantum mechanical/molecular mechanical approach. The active site structure was assessed by comparing calculated and experimental IR spectra, confirming the view that the active site structure is very similar to those of anaerobic standard hydrogenases. In addition, the data suggest the presence of a water molecule in the second coordination sphere of the active centre.DFG, EXC 314, Unifying Concepts in Catalysi

Microporous polymer network films covalently bound to gold electrodes

Dieser Beitrag ist mit Zustimmung des Rechteinhabers aufgrund einer (DFG geförderten) Allianz- bzw. Nationallizenz frei zugänglich.This publication is with permission of the rights owner freely accessible due to an Alliance licence and a national licence (funded by the DFG, German Research Foundation) respectively.Covalent attachment of a microporous polymer network (MPN) on a gold surface is presented. A functional bromophenyl-based self-assembled monolayer (SAM) formed on the gold surface acts as co-monomer in the polymerisation of the MPN yielding homogeneous and robust coatings. Covalent binding of the films to the electrode is confirmed by SEIRAS measurements.EC/FP7/278593/EU/Organic Zeolites/ORGZEODFG, EXC 314, Unifying Concepts in CatalysisBMBF, 03X5524, DELKAT - Hydrophobe Nanoreaktor Templatierung - Eine Tool-Box für optimierte Elektrokatalysatore

Understanding the formation of bulk- and surface-active layered (oxy)hydroxides for water oxidation starting from a cobalt selenite precursor

The urgent need for a stable, efficient, and affordable oxygen evolution reaction (OER) catalyst has led to the investigation of a vast amount of transition metal materials with multiple different anions.In situandpostcatalytic characterization shows that most materials transform during the harsh OER conditions to layered (oxy)hydroxides (LOH). Several open questions concerning thesein situformed LOH remain such as: an explanation for their strongly varying activities, or the effect of the precatalyst structure, leaching anions, and transformation conditions on the formed LOH. Herein, we report on a cobalt selenite precursor, which, depending on pH and potential, transforms irreversibly into two different LOH OER catalysts. Combining multiple electrochemical and analytical methodsexandin situ, we prove that one of these products is near-surface catalytically active and the other one throughout the bulk with anin situaverage cobalt oxidation state of 3.2. We deduce a detailed structural model explaining these differences and propose general concepts relating both the precatalyst structure and the transformation conditions to the final catalyst. Further, we apply these models to the most promising non-noble metal catalyst, NiFe LOH

Domain motions and electron transfer dynamics in 2Fe-superoxide reductase

Superoxide reductases are non-heme iron enzymes that represent valuable model systems for the reductive detoxification of reactive oxygen species. In the present study, we applied different theoretical methods to study the structural dynamics of a prototypical 2Fe-superoxide reductase and its influence on electron transfer towards the active site. Using normal mode and essential dynamics analyses, we could show that enzymes of this type are capable of well-defined, electrostatically triggered domain movements, which may allow conformational proofreading for cellular redox partners involved in intermolecular electron transfer. Moreover, these global modes of motion were found to enable access to molecular configurations with decreased tunnelling distances between the active site and the enzyme's second iron centre. Using all-atom classical molecular dynamics simulations and the tunnelling pathway model, however, we found that electron transfer between the two metal sites is not accelerated under these conditions. This unexpected finding suggests that the unperturbed enzymatic structure is optimized for intramolecular electron transfer, which provides an indirect indication of the biological relevance of such a mechanism. Consistently, efficient electron transfer was found to depend on a distinct route, which is accessible via the equilibrium geometry and characterized by a quasi conserved tyrosine that could enable multistep-tunnelling (hopping). Besides these explicit findings, the present study demonstrates the importance of considering both global and local protein dynamics, and a generalized approach for the functional analysis of these aspects is provided

Enzymatic and spectroscopic properties of a thermostable [NiFe]‑hydrogenase performing H2-driven NAD+-reduction in the presence of O2

Biocatalysts that mediate the H2-dependent reduction of NAD+ to NADH are attractive from both a fundamental and applied perspective. Here we present the first biochemical and spectroscopic characterization of an NAD+-reducing [NiFe]‑hydrogenase that sustains catalytic activity at high temperatures and in the presence of O2, which usually acts as an inhibitor. We isolated and sequenced the four structural genes, hoxFUYH, encoding the soluble NAD+-reducing [NiFe]‑hydrogenase (SH) from the thermophilic betaproteobacterium, Hydrogenophilus thermoluteolus TH-1T (Ht). The HtSH was recombinantly overproduced in a hydrogenase-free mutant of the well-studied, H2-oxidizing betaproteobacterium Ralstonia eutropha H16 (Re). The enzyme was purified and characterized with various biochemical and spectroscopic techniques. Highest H2-mediated NAD+ reduction activity was observed at 80 °C and pH 6.5, and catalytic activity was found to be sustained at low O2 concentrations. Infrared spectroscopic analyses revealed a spectral pattern for as-isolated HtSH that is remarkably different from those of the closely related ReSH and other [NiFe]‑hydrogenases. This indicates an unusual configuration of the oxidized catalytic center in HtSH. Complementary electron paramagnetic resonance spectroscopic analyses revealed spectral signatures similar to related NAD+-reducing [NiFe]‑hydrogenases. This study lays the groundwork for structural and functional analyses of the HtSH as well as application of this enzyme for H2-driven cofactor recycling under oxic conditions at elevated temperatures

In‐Liquid Plasma Modified Nickel Foam: NiOOH/NiFeOOH Active Site Multiplication for Electrocatalytic Alcohol, Aldehyde, and Water Oxidation

The oxygen evolution reaction (OER) and the value-added oxidation of renewable organic substrates are critical to supply electrons and protons for the synthesis of sustainable fuels. To meet industrial requirements, new methods for a simple, fast, environmental-friendly and cheap synthesis of robust, self-supported and high surface area electrodes are required. Herein, a novel in-liquid plasma (plasma electrolysis) approach for the growth of hierarchical nanostructures on nickel foam is reported on. Under morphology retention, iron can be doped into this high surface area electrode. For the oxidation of 5-(hydroxymethyl)furfural and benzyl alcohol, the iron-free, plasma-treated electrode is more suitable reaching current densities up to 800 mA cm$^{-2}$ with Faradaic efficiencies above 95%. For the OER, the iron-doped nickel foam electrode reaches the industrially relevant current density of 500 mA cm$^{-2}$ at 1.473 ± 0.013$_{VRHE}$ (60 °C) and shows no activity decrease over 140 h. The different effects of iron doping are rationalized using methanol probing and in situ Raman spectroscopy. Furthermore, the intrinsic activity is separated from the number of active sites, and, for the organic oxidation reactions, diffusion limitations are revealed. The authors anticipate that the plasma modified nickel foam will be suitable for various (electro)catalytic processes

The (In)Stability of Heterostructures During the Oxygen Evolution Reaction

The urgent need for efficient oxygen evolution reaction (OER) catalysts has led to the development and publication of many heterostructured catalysts. The application of such catalysts with multiple phases tremendously increases the material design dimensions, and numerous interface‐related effects can tune the OER performance. In this regard, multiple of these heterostructured electrodes show remarkable OER activities. However, it is not clear if these carefully designed interfaces remain under prolonged OER conditions. Herein, a molecular approach is used to synthesize four different nickel‐iron phosphide (heterostructured) materials and deposit them on fluorine‐doped tin oxide and nickel foam electrodes. The OER performance of the eight electrodes and the reconstruction of the four materials is investigated by in‐situ spectroscopy after one day of operation, enabled by a freeze‐quench approach. The most active electrode is also applied under industrial OER conditions and for the value‐added oxidation of alcohols to ketones. Before catalysis, this electrode comprises crystalline 4 nm nickel phosphide particles on an amorphous iron phosphide matrix. However, after 24 h, a homogenous nickel‐iron oxyhydroxide phase has formed. This work questions to which extent the design of heterostructures is a suitable strategy for non‐noble metal OER catalysis