Food Habits and Dietary Overlap of Newly Settled Red Drum (Sciaenops ocellatus) and Atlantic Croaker (Micropogonias undulatus) from Texas Seagrass Meadows

Food habits and dietary overlap of newly settled larval and juvenile red drum and Atlantic croaker were examined during the period when the two species co-occur in seagrass nurseries. A total of 274 red drum (4.00 - 19.99 mm SL) and 205 Atlantic croaker (8.00 - 17.99 mm SL) were used for this analysis. Of the red drum stomachs examined, 8.4% were empty while 28.8% of Atlantic croaker stomachs contained no food. Major prey items identified for both species were calanoid copepods, harpacticoid copepods and mysid shrimp across all size classes. Ontogenetic trophic niche shifts were detected for red drum and Atlantic croaker. Type and quantity of food ingested by red drum were similar across all stations (Aransas Bay Station: 1H, 2T and 3H) examined. Atlantic croaker ingested the same types of prey at all stations, but contained varying quantities of food throughout the study area. In general, high dietary overlap was observed between red drum and Atlantic croaker with most overlap values (Schoener’s index) exceeding 70%

Behavior, Color Change and Time for Sexual Inversion in the Protogynous Grouper (Epinephelus adscensionis)

Hermaphroditism, associated with territoriality and dominance behavior, is common in the marine environment. While male sex-specific coloration patterns have been documented in groupers, particularly during the spawning season, few data regarding social structure and the context for these color displays are available. In the present study, we define the social structure and male typical behavior of rock hind (Epinephelus adscensionis) in the wild. In addition, we detail the captive conditions and time period necessary to induce the onset of the sex-specific coloration and sexual change. At six oil production platform locations in the Gulf of Mexico, rock hind social group size and typical male rock hind social behavior were documented. We observed a rapid temporary color display in rock hind that could be turned on and off within three seconds and was used for confronting territory intruders and displays of aggression towards females. The male-specific “tuxedo” pattern consists of a bright yellow tail, a body with alternating dark brown and white patches and a dark bar extending from the upper mandible to the operculum. Identification and size ranges of male, female and intersex fish collected from oil platforms were determined in conjunction with gonadal histology. Rock hind social order is haremic with one dominant male defending a territory and a linear dominance hierarchy among individuals. In five captive experiments, the largest remaining female rock hind displayed the male specific color pattern within 32d after dominant male removal from the social group. To our knowledge, this is the first evidence in a grouper species of color patterning used to display territoriality and dominance outside of spawning aggregations. The behavioral paradigm described here is a key advance that will enable mechanistic studies of this complex sex change process

Comparison of Plankton Catch by Three Light-Trap Designs in the Northern Gulf of Mexico

The ichthyoplankton catch and zooplankton biomass estimates of three light-trap designs-cylindrical, quatrefoil, and rectangular-were compared over three consecutive nights at an offshore petroleum platform in the northern Gulf of Mexico. The quatrefoil light trap had higher fish and zooplankton abundance estimates than the other two designs. Categorical analysis of the two abundant fish taxa, Opisthonema oglinum and Anchoa spp., indicated that catch by the quatrefoil and rectangular traps was similar, capturing more larvae than juveniles and more O. oglinum than Anchoa spp. relative to cylindrical trap catch. Across all fish species, the quatrefoil captured a greater percentage of larvae. Other ontogenetic and species-specific differences were noted among the light-trap designs. Samples from vertical plankton tows underestimated larger size classes compared to light-trap catch. Light-trap catch per unit effort (CPUE) declined through the night, especially for the quatrefoil, and increased with depth. In contrast, the percentage of larvae captured across all traps increased through the night and decreased with depth, indicating that CPUE was related mostly to juvenile catch. The percentage of larvae also decreased with increasing water current speed

Effects of nursery environmental cycles on larval red drum (Sciaenops ocellatus) growth and survival

Red drum early larval stages migrate through coastal inlets and settle into shallow seagrass meadows within estuaries. This study describes environmental rhythms (ER) in red drum nursery habitats and evaluates their role in larval growth. Well-defined diel ER were observed in temperature (amplitude: 2 to 4.5°C) and dissolved oxygen (DO) (range: 2.9-7.5 mg O2 L-1), and sporadic cooling caused by cold fronts. We exposed groups of settlement sized larvae (4.9 mm standard length) to two oscillating temperature treatments (amplitudes: 3 and 6°C; daily mean 27°C), an oscillating DO treatment (range: 2.4-6.1 mg O2 L-1; daily mean 4.2 mg O2 L-1) and a control (no cycles; daily mean 27°C, 6.4 mg O2 L-1). Relative to controls, growth was significantly reduced in the DO treatment but not in the temperature treatments. Survival was similar in all treatments. Fish previously exposed to temperature cycles maintained faster growth rates and higher food intake than control fish when exposed to a simulated cold front. These results suggest that (1) ER may impart a physiological advantage to fish, (2) acclimation to oscillating DO environments is unlikely, and (3) field estimates of environmental characteristics based upon averaged daily point samples are inadequate for predicting fish growth

Distribution, growth, and mortality of sailfish (Istiophorus platypterus) larvae in the northern Gulf of Mexico

Ichthyoplankton surveys were conducted in shelf and slope waters of the northern Gulf of Mexico during the months of May–September in 2005 and 2006 to investigate the potential role of this region as spawning and nursery habitat of sailfish (Istiophorus platypterus). During the two-year study, 2426 sailfish larvae were collected, ranging in size from 2.0 to 24.3 mm standard length. Mean density for all neuston net collections (n=288) combined was 1.5 sailfish per 1000 m2, and maximum density was observed within frontal features created by hydrodynamic convergence (2.3 sailfish per 1000 m2). Sagittal otoliths were extracted from 1330 larvae, and otolith microstructure analysis indicated that the sailfish ranged in age from 4 to 24 days after hatching (mean=10.5 d, standard deviation [SD]=3.2 d). Instantaneous growth coefficients (g) among survey periods (n=5) ranged from 0.113 to 0.127, and growth peaked during July 2005 collections when density within frontal features was highest. Daily instantaneous mortality rates (Z) ranged from 0.228 to 0.381, and Z was indexed to instantaneous weight-specific growth (G) to assess stage-specific production potential of larval cohorts. Ratios of G to Z were greater than 1.0 for all but one cohort examined, indicating that cohorts were gaining biomass during the majority of months investigated. Stage-specific production potential, in combination with catch rates and densities of larvae, indicates that the Gulf of Mexico likely represents important spawning and nursery habitat for sailfish

Intercalibration of four spectrofluorometric protocols for measuring RNA/DNA ratios in larval and juvenile fish

The ratio of tissue RNA to DNA (R/D) is a widely used index of recent growth and nutritional condition in larval and juvenile fish. To date, however, no standard technique for measuring nucleic acids has been adopted. Because methodological details can affect the estimate of R/D, researchers using different analytical protocols have been unable to compare ratios directly. Here, we report on the results of an international interlaboratory calibration of 4 spectrofluorometric protocols to quantify nucleic acids. Replicate sets of 5 tissue samples and 2 standards (common standards) were supplied to each of 5 researchers for analysis with their own methods and standards. Two approaches were evaluated for mitigating the observed differences in values: 1) the use of common nucleic acid standards and 2) standardizing to a common slope ratio (slope of DNA standard curve/slope of RNA standard curve or mDNA/mRNA). Adopting common standards slightly reduced the variability among protocols but did not overcome the problem. When tissue R/Ds were standardized based on a common mDNA/mRNA slope ratio, the variance attributed to analytical protocol decreased dramatically from 57.1% to 3.4%. We recommend that the ratio of the slopes of the standard curves be provided to facilitate intercomparability of R/D results among laboratories using different spectrofluorometric methods for the analysis of nucleic acids in fish

Comparison of Plankton Catch by Three Light-Trap Designs in the Northern Gulf of Mexico

The ichthyoplankton catch and zooplankton biomass estimates of three light-trap designs-cylindrical, quatrefoil, and rectangular-were compared over three consecutive nights at an offshore petroleum platform in the northern Gulf of Mexico. The quatrefoil light trap had higher fish and zooplankton abundance estimates than the other two designs. Categorical analysis of the two abundant fish taxa, Opisthonema oglinum and Anchoa spp., indicated that catch by the quatrefoil and rectangular traps was similar, capturing more larvae than juveniles and more O. oglinum than Anchoa spp. relative to cylindrical trap catch. Across all fish species, the quatrefoil captured a greater percentage of larvae. Other ontogenetic and species-specific differences were noted among the light-trap designs. Samples from vertical plankton tows underestimated larger size classes compared to light-trap catch. Light-trap catch per unit effort (CPUE) declined through the night, especially for the quatrefoil, and increased with depth. In contrast, the percentage of larvae captured across all traps increased through the night and decreased with depth, indicating that CPUE was related mostly to juvenile catch. The percentage of larvae also decreased with increasing water current speed

PERFORMANCE OF FISH LARVAE: EFFECTS OF ATRAZINE,

To my husband, Rafael Perez, to whom I owe everything, who has been with me through the “good and the bad”. To my son, Diego T. Perez, and my daughter, Cecilia A. Perez, who have always brightened my day with laughter and love. And to my parents, Alvaro Alvarez and Marie Cecilie d’Otreppe de Bouvette, who, without ever a doubt, have supported me on every decision I have made. Thank you. Acknowledgements I wish to thank my adviser Dr. Lee A. Fuiman, for his guidance, support, and encouragement. I am also grateful to the members of my committee, Dr. David P. Crews, Dr. G. Joan Holt, Dr. B. Scott Nunez and Dr. Peter Thomas for their helpful suggestions and critical review of this dissertation. Thanks to my laboratory mates; Hunter Samberson and Brie Sarkisian for their help with fish rearing; Ian McCarthy for helping with fish rearing and collection of data, and Kiersten Madden for her support and critique of this work. My special thanks to Rafael Perez, Scott Applebaum, and Ian McCarthy for discussion in the development of the research presented here. I am sincerely thankful to all my friends at the Marine Science Institute and Port Aransas for their help and support, without whom this dissertation would not have happened. v SIGNIFICANCE OF ENVIRONMENTALLY REALISTI

Sensitivity of Mountain Wave Drag Estimates on Separation Methods and Proposed Improvements

Internal gravity waves (GWs) are ubiquitous in the atmosphere, making significant contributions to the mesoscale motions. Since the majority of their spectrum is unresolved in global circulation models, their effects need to be parameterized. In recent decades GWs have been increasingly studied in high-resolution simulations, which, unlike direct observations, allow us to explore full spatio-temporal variations of the resolved wave field. In our study we analyze and refine a traditional method for GW analysis in a high-resolution simulation on a regional domain around the Drake Passage. We show that GW momentum drag estimates based on the Gaussian high-pass filter method applied to separate GW perturbations from the background are sensitive to the choice of a cutoff parameter. The impact of the cutoff parameter is higher for horizontal fluxes of horizontal momentum, which indicates higher sensitivity for horizontally propagating waves. Two modified methods, which choose the parameter value from spectral information, are proposed. The dynamically determined cutoff is mostly higher than the traditional cutoff values around 500 km, leading to larger GW fluxes and drag, and varies with time and altitude. The differences between the traditional and the modified methods are especially pronounced during events with significant drag contributions from horizontal momentum fluxes

Biosynthesis of long-chain polyunsaturated fatty acids in marine fish: Characterization of an Elovl4-like elongase from cobia Rachycentron canadum and activation of the pathway during early life stages

Marine fish, unlike freshwater species, have been generally considered to have a limited ability to biosynthesize long-chain polyunsaturated fatty acids (LC-PUFA) from C18 precursors due to apparent limited enzymatic activities involved in the pathway. Although LC-PUFA play important physiological roles throughout the entire life cycle, requirements for early life stages are especially high and provision of preformed LC-PUFA in egg lipids appears critical to support the formation of developing tissues where these compounds accumulate. No studies, however, have been conducted to explore the capability of marine fish embryos (here referring to life stages from zygote to the oesophagus opening) for de novo synthesis of the LC-PUFA required for normal growth and development. The present study aimed to investigate the activation of the LC-PUFA biosynthetic pathway during embryogenesis of the marine teleost cobia (Rachycentron canadum). First, a fatty acyl elongase with sequence similarity to mammalian elongase of very long-chain fatty acids 4 (Elovl4) was isolated, and its biochemical function characterized showing that it catalyzed the production of very long-chain fatty acids (VLC-FA) including both saturated and polyunsaturated fatty acids with chain lenghts ≥ 24 carbons. Notably, cobia Elovl4 was able to elongate 22:5n-3 to 24:5n-3 and thus could play a key role in the biosynthesis of docosahexaenoic acid (22:6n-3), a critical fatty acid in neural tissues. Subsequently, the fatty acid dynamics of embryos at different developmental stages and the temporal expression patterns of target genes including elovl4, and the formerly characterized elovl5 elongase and ∆6 fatty acyl desaturase, were analyzed in order to elucidate the overall activation of the LC-PUFA biosynthetic pathway in cobia embryos. Our results indicated that expression of the LC-PUFA biosynthetic pathway in cobia embryos is initiated at 12-18 hours post-fertilization