Some are more equal than others : the role of ‘keystone’ species in the degradation of recalcitrant substrates

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When can gravitational-wave observations distinguish between black holes and neutron stars?

Gravitational-wave observations of compact binaries have the potential to uncover the distribution of masses and angular momenta of black holes and neutron stars in the universe. The binary components' physical parameters can be inferred from their effect on the phasing of the gravitational-wave signal, but a partial degeneracy between the components' mass ratio and their angular momenta limits our ability to measure the individual component masses. At the typical signal amplitudes expected by the Advanced Laser Interferometer Gravitational-wave Observatory (signal-to-noise ratios between 10 and 20), we show that it will in many cases be difficult to distinguish whether the components are neutron stars or black holes. We identify when the masses of the binary components could be unambiguously measured outside the range of current observations: a system with a chirp mass $\mathcal{M} \le 0.871$ M$_\odot$ would unambiguously contain the smallest-mass neutron star observed, and a system with \mathcal{M} \ge 2.786 \Msun must contain a black hole. However, additional information would be needed to distinguish between a binary containing two 1.35 M$_\odot$ neutron stars and an exotic neutron-star--black-hole binary. We also identify those configurations that could be unambiguously identified as black-hole binaries, and show how the observation of an electromagnetic counterpart to a neutron-star--black-hole binary could be used to constrain the black-hole spin.Comment: 5 pages, 4 figures. Final version to be published in Ap.J.Let

Persistence of chlorpropham (CIPC) in the concrete flooring of potato stores

The loss of the sprout suppressant, chlorpropham (CIPC), to the fabric of potato stores is currently of concern due to the risk of potential cross contamination of other crops subsequently housed in these stores. HPLC UV/VIS and GCMS methods were successfully employed to detect CIPC in the concrete flooring of research and commercial potato stores with histories of between 1 and 26 years of use. The concentrations in identical research stores, with different numbers of applications, were in the range 0.58–5.7 and 3.4–112 μg g−1, suggesting the magnitude of contamination was influenced by the number of applications. Commercial store A, with a history of 18 seasons of applications (estimate of total CIPC applied 2040 kg), had concentrations varying between 6 and 48 μg g−1 in the top three centimetres, with more than 92% within the top centimetre. In contrast, commercial store B, with a history of less than five seasons of applications (estimate of total CIPC applied 319 kg), had concentrations varying between 0.58 and 304 μg g−1 in the top four centimetres, with less than 47% within the top centimetre. The difference in depth distributions between A and B may be due to the structural integrity of the concrete, which was much poorer in B. CIPC was persistent in all stores irrespective of the total quantities of CIPC applied and date of the final application

Effect of alcohol addition on the movement of petroleum hydrocarbon fuels in soil

Groundwater contamination by fuel spills from aboveground and underground storage tanks has been of growing concern in recent years. This problem has been magnified by the addition of oxygenates, such as ethanol and methyl-tertiary-butyl ether (MTBE) to fuels to reduce vehicular emissions to the atmosphere. These additives, although beneficial in reducing atmospheric pollution, may, however, increase groundwater contamination due to the co-solvency of petroleum hydrocarbons and by the provision of a preferential substrate for microbial utilisation. With the introduction of ethanol to diesel fuel imminent and the move away from MTBE use in many states of the USA, the environmental implications associated with ethanol additive fuels must be thoroughly investigated. Diesel fuel movement was followed in a 1-m soil column and the effect of ethanol addition to diesel fuel on this movement determined. The addition of 51% ethanol to diesel fuel was found to enhance the downward migration of the diesel fuel components, thus increasing the risk of groundwater contamination. A novel method using soil packcd HPLC columns allowed the influence of ethanol on individual aromatic hydrocarbon movement to be studied. The levels of ethanol addition investigated were at the current additive level (approx. 25%) for ethanol additive fuels in Brazil and values above (50%) and below (10%) this level. An aqueous ethanol concentration above 10% was required for any movement to occur. At 25% aqueous ethanol, the majority of hydrocarbons were mobilised and the retention behaviour of the soil column lessened. At 50% aqueous ethanol, all the hydrocarbons were found to move unimpeded through the columns. The retention behaviour of the soil was found to change significantly when both organic matter content and silt/clay content was reduced. Unexpectedly, sandy soil with low organic matter and low silt/clay was found to have a retentive behaviour similar to sandy subsoil with moderate silt/clay, but little organic matter. It was concluded that sand grains might have a more important role in the adsorption of petroleum hydrocarbons than first realised. This method has shown that soil packed HPLC columns can be used to provide a quick estimate of petroleum hydrocarbon, and possibly other organic contaminant, movement in a variety of different soil types

Template banks to search for compact binaries with spinning components in gravitational wave data

Gravitational waves from coalescing compact binaries are one of the most promising sources for detectors such as LIGO, Virgo and GEO600. If the components of the binary posess significant angular momentum (spin), as is likely to be the case if one component is a black hole, spin-induced precession of a binary's orbital plane causes modulation of the gravitational-wave amplitude and phase. If the templates used in a matched-filter search do not accurately model these effects then the sensitivity, and hence the detection rate, will be reduced. We investigate the ability of several search pipelines to detect gravitational waves from compact binaries with spin. We use the post-Newtonian approximation to model the inspiral phase of the signal and construct two new template banks using the phenomenological waveforms of Buonanno, Chen and Vallisneri. We compare the performance of these template banks to that of banks constructed using the stationary phase approximation to the non-spinning post-Newtonian inspiral waveform currently used by LIGO and Virgo in the search for compact binary coalescence. We find that, at the same false alarm rate, a search pipeline using phenomenological templates is no more effective than a pipeline which uses non-spinning templates. We recommend the continued use of the non-spinning stationary phase template bank until the false alarm rate associated with templates which include spin effects can be substantially reduced.Comment: 11 pages, 3 figure

Polysaccharide utilization loci and nutritional specialization in a dominant group of butyrate-producing human colonic Firmicutes

Acknowledgements The Rowett Institute of Nutrition and Health (University of Aberdeen) receives financial support from the Scottish Government Rural and Environmental Sciences and Analytical Services (RESAS). POS is a PhD student supported by the Scottish Government (RESAS) and the Science Foundation Ireland, through a centre award to the APC Microbiome Institute, Cork, Ireland. Data Summary The high-quality draft genomes generated in this work were deposited at the European Nucleotide Archive under the following accession numbers: 1. Eubacterium rectale T1-815; CVRQ01000001–CVRQ0100 0090: http://www.ebi.ac.uk/ena/data/view/PRJEB9320 2. Roseburia faecis M72/1; CVRR01000001–CVRR010001 01: http://www.ebi.ac.uk/ena/data/view/PRJEB9321 3. Roseburia inulinivorans L1-83; CVRS01000001–CVRS0 100 0151: http://www.ebi.ac.uk/ena/data/view/PRJEB9322Peer reviewedPublisher PD

Ruminococcal cellulosome systems from rumen to human

This article is protected by copyright. All rights reserved. The authors appreciate the kind assistance of Miriam Lerner (ImmunArray Ltd. Company, Rehovot, Israel) with experiments involving the MicroGrid II arrayer. This research was supported by a grant (No. 1349) to EAB also from the Israel Science Foundation (ISF) and a grant (No. 24/11) issued to RL by The Sidney E. Frank Foundation also through the ISF. Additional support was obtained from the establishment of an Israeli Center of Research Excellence (I-CORE Center No. 152/11) managed by the Israel Science Foundation, from the United States-Israel Binational Science Foundation (BSF), Jerusalem, Israel, by the Weizmann Institute of Science Alternative Energy Research Initiative (AERI) and the Helmsley Foundation. The authors also appreciate the support of the European Union, Area NMP.2013.1.1-2: Self-assembly of naturally occurring nanosystems: CellulosomePlus Project number: 604530 and an ERA-IB Consortium (EIB.12.022), acronym FiberFuel. HF and SHD acknowledge support from the Scottish Government Food Land and People programme and from BBSRC grant no. BB/L009951/1. In addition, EAB is grateful for a grant from the F. Warren Hellman Grant for Alternative Energy Research in Israel in support of alternative energy research in Israel administered by the Israel Strategic Alternative Energy Foundation (I-SAEF). E.A.B. is the incumbent of The Maynard I. and Elaine Wishner Chair of Bio-organic ChemistryPeer reviewedPostprin

Unique Organization of Extracellular Amylases into Amylosomes in the Resistant Starch-Utilizing Human Colonic Firmicutes Bacterium Ruminococcus bromii

ACKNOWLEDGMENTS We acknowledge support from BBSRC grant no. BB/L009951/1, from the Scottish government Food, Land and People program, and from the Society for Applied Microbiology. E.A.B. is supported by a grant (no. 1349/13) from the Israel Science Foundation (ISF), Jerusalem, Israel, and by a grant from the United States-Israel Binational Science Foundation (BSF). E.A.B. is the incumbent of the Maynard I. and Elaine Wishner Chair of Bio-organic Chemistry. Thanks are due to Fergus Nicol for proteomic analysis and to Auriane Bernard for enzyme assays on stationary-phase cultures. We also thank Julian Parkhill and Keith Turner (Wellcome Trust Sanger Institute, Cambridge, United Kingdom) for making the R. bromii L2-63 genome sequence available for analysis.Peer reviewedPublisher PD

Two Devices for Removing Sludge From Bioreactor Wastewater

Two devices a magnetic separator and a special filter denoted a self-regenerating separator (SRS) have been developed for separating sludge from the stream of wastewater from a bioreactor. These devices were originally intended for use in microgravity, but have also been demonstrated to function in normal Earth gravity. The magnetic separator (see Figure 1) includes a thin-walled nonmagnetic, stainless-steel cylindrical drum that rotates within a cylindrical housing. The wastewater enters the separator through a recirculation inlet, and about 80 percent of the wastewater flow leaves through a recirculation outlet. Inside the drum, a magnet holder positions strong permanent magnets stationary and, except near a recirculation outlet, close to the inner drum surface. To enable magnetic separation, magnetite (a ferromagnetic and magnetically soft iron oxide) powder is mixed into the bioreactor wastewater. The magnetite becomes incorporated into the sludge by condensation, onto the powder particles, of microbe flocks that constitute the sludge. As a result, the magnets inside the drum magnetically attract the sludge onto the outer surface of the drum