Ab initio investigation of the crystallization mechanism of cadmium selenide

Cadmium selenide (CdSe) is an inorganic semiconductor with unique optical and electronic properties that made it useful in various applications, including solar cells, light-emitting diodes, and biofluorescent tagging. In order to synthesize high-quality crystals and subsequently integrate them into devices, it is crucial to understand the atomic scale crystallization mechanism of CdSe. Unfortunately, such studies are still absent in the literature.To overcome this limitation, we employed an enhanced sampling-accelerated active learning approach to construct a deep neural potential with ab initio accuracy for studying the crystallization of CdSe.Our brute-force molecular dynamics simulations revealed that a spherical-like nucleus formed spontaneously and stochastically, resulting in a stacking disordered structure where the competition between hexagonal wurtzite and cubic zinc blende polymorphs is temperature-dependent. We found that pure hexagonal crystal can only be obtained approximately above 1430 K, which is 35 K below its melting temperature. We observed that the solidification dynamics of Cd and Se atoms were distinct due to their different diffusion coefficients. The solidification process was initiated by lower mobile Se atoms forming tetrahedral frameworks, followed by Cd atoms occupying these tetrahedral centers and settling down until the third-shell neighbor of Se atoms sited on their lattice positions. Therefore, the medium-range ordering of Se atoms governs the crystallization process of CdSe. Our findings indicate that understanding the complex dynamical process is the key to comprehending the crystallization mechanism of compounds like CdSe, and can shed lights in the synthesis of high-quality crystals.Comment: 25 pages, 7 figure

Finding Efficient Collective Variables: The Case of Crystallization

Several enhanced sampling methods such as umbrella sampling or metadynamics rely on the identification of an appropriate set of collective variables. Recently two methods have been proposed to alleviate the task of determining efficient collective variables. One is based on linear discriminant analysis, the other on a variational approach to conformational dynamics, and uses time-lagged independent component analysis. In this paper, we compare the performance of these two approaches in the study of the homogeneous crystallization of two simple metals. We focus on Na and Al and search for the most efficient collective variables that can be expressed as a linear combination of X-ray diffraction peak intensities. We find that the performances of the two methods are very similar. However, the method based on linear discriminant analysis, in its harmonic version, is to be preferred because it is simpler and much less computationally demanding

Imperfectly coordinated water molecules pave the way for homogeneous ice nucleation

Water freezing is ubiquitous on Earth, affecting many areas from biology to climate science and aviation technology. Probing the atomic structure in the homogeneous ice nucleation process from scratch is of great value but still experimentally unachievable. Theoretical simulations have found that ice originates from the low-mobile region with increasing abundance and persistence of tetrahedrally coordinated water molecules. However, a detailed microscopic picture of how the disordered hydrogen-bond network rearranges itself into an ordered network is still unclear. In this work, we use a deep neural network (DNN) model to "learn" the interatomic potential energy from quantum mechanical data, thereby allowing for large-scale and long molecular dynamics (MD) simulations with ab initio accuracy. The nucleation mechanism and dynamics at atomic resolution, represented by a total of 36 $\mu$s-long MD trajectories, are deeply affected by the structural and dynamical heterogeneity in supercooled water. We find that imperfectly coordinated (IC) water molecules with high mobility pave the way for hydrogen-bond network rearrangement, leading to the growth or shrinkage of the ice nucleus. The hydrogen-bond network formed by perfectly coordinated (PC) molecules stabilizes the nucleus, thus preventing it from vanishing and growing. Consequently, ice is born through competition and cooperation between IC and PC molecules. We anticipate that our picture of the microscopic mechanism of ice nucleation will provide new insights into many properties of water and other relevant materials.Comment: 20 pages, 4 figures, under peer revie

DeNoising-MOT: Towards Multiple Object Tracking with Severe Occlusions

Multiple object tracking (MOT) tends to become more challenging when severe occlusions occur. In this paper, we analyze the limitations of traditional Convolutional Neural Network-based methods and Transformer-based methods in handling occlusions and propose DNMOT, an end-to-end trainable DeNoising Transformer for MOT. To address the challenge of occlusions, we explicitly simulate the scenarios when occlusions occur. Specifically, we augment the trajectory with noises during training and make our model learn the denoising process in an encoder-decoder architecture, so that our model can exhibit strong robustness and perform well under crowded scenes. Additionally, we propose a Cascaded Mask strategy to better coordinate the interaction between different types of queries in the decoder to prevent the mutual suppression between neighboring trajectories under crowded scenes. Notably, the proposed method requires no additional modules like matching strategy and motion state estimation in inference. We conduct extensive experiments on the MOT17, MOT20, and DanceTrack datasets, and the experimental results show that our method outperforms previous state-of-the-art methods by a clear margin.Comment: ACM Multimedia 202