1,233 research outputs found
On the nonequilibrium entropy of large and small systems
Thermodynamics makes definite predictions about the thermal behavior of
macroscopic systems in and out of equilibrium. Statistical mechanics aims to
derive this behavior from the dynamics and statistics of the atoms and
molecules making up these systems. A key element in this derivation is the
large number of microscopic degrees of freedom of macroscopic systems.
Therefore, the extension of thermodynamic concepts, such as entropy, to small
(nano) systems raises many questions. Here we shall reexamine various
definitions of entropy for nonequilibrium systems, large and small. These
include thermodynamic (hydrodynamic), Boltzmann, and Gibbs-Shannon entropies.
We shall argue that, despite its common use, the last is not an appropriate
physical entropy for such systems, either isolated or in contact with thermal
reservoirs: physical entropies should depend on the microstate of the system,
not on a subjective probability distribution. To square this point of view with
experimental results of Bechhoefer we shall argue that the Gibbs-Shannon
entropy of a nano particle in a thermal fluid should be interpreted as the
Boltzmann entropy of a dilute gas of Brownian particles in the fluid
Fibroblastic polyp of the colon: clinicopathological analysis of 10 cases with emphasis on its common association with serrated crypts
: To describe the clinical and pathological features of 10 further cases of fibroblastic polyps (FP), a recently described, distinctive type of colorectal mucosal polyp. Methods and results : The patients were seven women and three men with ages ranging from 44 to 63 years. The lesions ranged in size from 2 to 4 mm. Eight of the polyps were located in the sigmoid colon. Five cases were associated with hyperplastic polyps. Histologically, FP displayed bland, plump spindle cells with oval nuclei arranged as bundles parallel to the surface or as haphazardly orientated sheets with a focal periglandular or perivascular concentric arrangement. Eight polyps represented mixed fibroblastic/hyperplastic polyps as they contained serrated (hyperplastic) crypts. Immunohistochemically, all cases were positive for vimentin and negative for desmin, smooth-muscle actin, h-caldesmon, S100 protein, c-Kit, epithelial membrane antigen, cytokeratin AE1/3, CD34, CD68, COX-2, and factor XIIIa. Ultrastructural examination supported the fibroblastic nature of the tumour cells. Conclusions : FP is a distinctive type of benign mucosal colorectal polyp characterized by its distal location, small size, frequent association with hyperplastic polyps, distinct morphological appearance and typical immunonegativity for markers of specific differentiation. FP with serrated crypts (mixed fibroblastic/hyperplastic polyp) represents a frequent variant of this lesion. Pathologists should recognize FP and discriminate it from other types of colorectal polyps.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/72181/1/j.1365-2559.2006.02357.x.pd
Stringy Stability of Charged Dilaton Black Holes with Flat Event Horizon
Electrically charged black holes with flat event horizon in anti-de Sitter
space have received much attention due to various applications in Anti-de
Sitter/Conformal Field Theory (AdS/CFT) correspondence, from modeling the
behavior of quark-gluon plasma to superconductor. Crucial to the physics on the
dual field theory is the fact that when embedded in string theory, black holes
in the bulk may become vulnerable to instability caused by brane
pair-production. Since dilaton arises naturally in the context of string
theory, we study the effect of coupling dilaton to Maxwell field on the
stability of flat charged AdS black holes. In particular, we study the
stability of Gao-Zhang black holes, which are locally asymptotically anti-de
Sitter. We find that for dilaton coupling parameter > 1, flat black
holes are stable against brane pair production, however for 0 < < 1,
the black holes eventually become unstable as the amount of electrical charges
is increased. Such instability however, behaves somewhat differently from that
of flat Reissner-Nordstr\"om black holes. In addition, we prove that the
Seiberg-Witten action of charged dilaton AdS black hole of Gao-Zhang type with
flat event horizon (at least in 5-dimension) is always logarithmically
divergent at infinity for finite values of , and is finite and positive
in the case tends to infinity . We also comment on the robustness of
our result for other charged dilaton black holes that are not of Gao-Zhang
type.Comment: Fixed some confusions regarding whether part of the discussions
concern electrically charged hole or magnetically charged one. No changes to
the result
Role of Esrrg in the Fibrate-Mediated Regulation of Lipid Metabolism Genes in Human ApoA-I Transgenic Mice
We have used a new ApoA-I transgenic mouse model to identify by global gene expression profiling, candidate genes that affect lipid and lipoprotein metabolism in response to fenofibrate treatment. Multilevel bioinformatical analysis and stringent selection criteria (2-fold change, 0% false discovery rate) identified 267 significantly changed genes involved in several molecular pathways. The fenofibrate-treated group did not have significantly altered levels of hepatic human APOA-I mRNA and plasma ApoA-I compared with the control group. However, the treatment increased cholesterol levels to 1.95-fold mainly due to the increase in high-density lipoprotein (HDL) cholesterol. The observed changes in HDL are associated with the upregulation of genes involved in phospholipid biosynthesis and lipid hydrolysis, as well as phospholipid transfer protein. Significant upregulation was observed in genes involved in fatty acid transport and β-oxidation, but not in those of fatty acid and cholesterol biosynthesis, Krebs cycle and gluconeogenesis. Fenofibrate changed significantly the expression of seven transcription factors. The estrogen receptor-related gamma gene was upregulated 2.36-fold and had a significant positive correlation with genes of lipid and lipoprotein metabolism and mitochondrial functions, indicating an important role of this orphan receptor in mediating the fenofibrate-induced activation of a specific subset of its target genes.National Institutes of Health (HL48739 and HL68216); European Union (LSHM-CT-2006-0376331, LSHG-CT-2006-037277); the Biomedical Research Foundation of the Academy of Athens; the Hellenic Cardiological Society; the John F Kostopoulos Foundatio
Anti-inflammatory properties of mutolide isolated from the fungus Lepidosphaeria species (PM0651419)
Study of pulsatile pressure-driven electroosmotic flows through an elliptic cylindrical microchannel with the Navier slip condition
This paper aims to study an unsteady electric field-driven and pulsatile pressure-driven flow of a Newtonian fluid in an elliptic cylindrical microchannel with Navier boundary wall slip. The governing equations of the slip flow and distributions of electric potential and charge densities are the modified Navier-Stokes equations, the Poisson equation and the Nernst-Planck equations, respectively. Analytical and numerical analyses based on the Mathieu and modified Mathieu equations are performed to investigate the interplaying effects of pulsatile pressure gradients and the slip lengths on the electroosmotic flow
Thromboembolic risks of recombinant factor VIIa Use in warfarin-associated intracranial hemorrhage: a case–control study
Impact Factor: outdated artefact or stepping-stone to journal certification?
A review of Garfield's journal impact factor and its specific implementation
as the Thomson Reuters Impact Factor reveals several weaknesses in this
commonly-used indicator of journal standing. Key limitations include the
mismatch between citing and cited documents, the deceptive display of three
decimals that belies the real precision, and the absence of confidence
intervals. These are minor issues that are easily amended and should be
corrected, but more substantive improvements are needed. There are indications
that the scientific community seeks and needs better certification of journal
procedures to improve the quality of published science. Comprehensive
certification of editorial and review procedures could help ensure adequate
procedures to detect duplicate and fraudulent submissions.Comment: 25 pages, 12 figures, 6 table
Exact Hybrid Particle/Population Simulation of Rule-Based Models of Biochemical Systems
Detailed modeling and simulation of biochemical systems is complicated by the problem of combinatorial complexity, an explosion in the number of species and reactions due to myriad protein-protein interactions and post-translational modifications. Rule-based modeling overcomes this problem by representing molecules as structured objects and encoding their interactions as pattern-based rules. This greatly simplifies the process of model specification, avoiding the tedious and error prone task of manually enumerating all species and reactions that can potentially exist in a system. From a simulation perspective, rule-based models can be expanded algorithmically into fully-enumerated reaction networks and simulated using a variety of network-based simulation methods, such as ordinary differential equations or Gillespie's algorithm, provided that the network is not exceedingly large. Alternatively, rule-based models can be simulated directly using particle-based kinetic Monte Carlo methods. This "network-free" approach produces exact stochastic trajectories with a computational cost that is independent of network size. However, memory and run time costs increase with the number of particles, limiting the size of system that can be feasibly simulated. Here, we present a hybrid particle/population simulation method that combines the best attributes of both the network-based and network-free approaches. The method takes as input a rule-based model and a user-specified subset of species to treat as population variables rather than as particles. The model is then transformed by a process of "partial network expansion" into a dynamically equivalent form that can be simulated using a population-adapted network-free simulator. The transformation method has been implemented within the open-source rule-based modeling platform BioNetGen, and resulting hybrid models can be simulated using the particle-based simulator NFsim. Performance tests show that significant memory savings can be achieved using the new approach and a monetary cost analysis provides a practical measure of its utility. © 2014 Hogg et al
Effect of Anti-Obesity Drug on Cardiovascular Risk Factors: A Systematic Review and Meta-Analysis of Randomized Controlled Trials
BACKGROUND: Anti-obesity drugs are widely used to prevent the complications of obesity, however, the effects of anti-obesity drugs on cardiovascular risk factors are unclear at the present time. We carried out a comprehensively systematic review and meta-analysis to assess the effects of anti-obesity drugs on cardiovascular risk factors. METHODOLOGY AND PRINCIPAL FINDINGS: We systematically searched Medline, EmBase, the Cochrane Central Register of Controlled Trials, reference lists of articles and proceedings of major meetings for relevant literatures. We included randomized placebo-controlled trials that reported the effects of anti-obesity drugs on cardiovascular risk factors compared to placebo. Overall, orlistat produced a reduction of 2.39 kg (95%CI-3.34 to -1.45) for weight, a reduction of 0.27 mmol/L (95%CI: -0.36 to -0.17) for total cholesterol, a reduction of 0.21 mmol/L (95%CI: -0.30 to -0.12) for LDL, a reduction of 0.12 mmol/L (95%CI: -0.20 to -0.04) for fasting glucose, 1.85 mmHg reduction (95%CI: -3.30 to -0.40) for SBP, and a reduction of 1.49 mmHg (95%CI: -2.39 to -0.58) for DBP. Sibutramine only showed effects on weight loss and triglycerides reduction with statistical significances. Rimonabant was associated with statistically significant effects on weight loss, SBP reduction and DBP reduction. No other significantly different effects were identified between anti-obesity therapy and placebo. CONCLUSION/SIGNIFICANCE: We identified that anti-obesity therapy was associated with a decrease of weight regardless of the type of the drug. Orlistat and rimonabant could lead to an improvement on cardiovascular risk factors. However, Sibutramine may have a direct effect on cardiovascular risk factors
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