662 research outputs found
Branes with Background Fields in Boundary State Formalism
Interaction of branes in presence of internal gauge fields is considered by
using the boundary state formalism. This approach enables us to consider the
problems that are not easily accessible to the canonical approach via open
strings. The effects of compactification of some of the dimensions on tori are
also discussed. Also we study the massless state contribution on this
interaction.Comment: 12 pp. No figure
Picosecond fluctuating protein energy landscape mapped by pressure–temperature molecular dynamics simulation
Microscopic statistical pressure fluctuations can, in principle, lead to corresponding fluctuations in the shape of a protein energy landscape. To examine this, nanosecond molecular dynamics simulations of lysozyme are performed covering a range of temperatures and pressures. The well known dynamical transition with temperature is found to be pressure-independent, indicating that the effective energy barriers separating conformational substates are not significantly influenced by pressure. In contrast, vibrations within substates stiffen with pressure, due to increased curvature of the local harmonic potential in which the atoms vibrate. The application of pressure is also shown to selectively increase the damping of the anharmonic, low-frequency collective modes in the protein, leaving the more local modes relatively unaffected. The critical damping frequency, i.e., the frequency at which energy is most efficiently dissipated, increases linearly with pressure. The results suggest that an invariant description of protein energy landscapes should be subsumed by a fluctuating picture and that this may have repercussions in, for example, mechanisms of energy dissipation accompanying functional, structural, and chemical relaxation
Mixed Branes Interaction in Compact Spacetime
We present a general description of two mixed branes interactions. For this
we consider two mixed branes with dimensions p_1 and p_2, in external field
B_{\mu\nu} and arbitrary gauge fields A^1_{\alpha_1} and A^2_{\alpha_2} on the
world volume of them, in spacetime in which some of its directions are
compactified on circles with different radii. Some examples are considered to
clear these general interactions. Finally contribution of the massless states
on the interactions is extracted. Closed string with mixed boundary conditions
and boundary state formalism, provide useful tools for calculation of these
interactions.Comment: 22 pages, to appear in Nucl. Phys.
Vibrational energy relaxation in proteins
An overview of theories related to vibrational energy relaxation (VER) in
proteins is presented. VER of a selected mode in cytochrome c is studied using
two theoretical approaches. One is the equilibrium simulation approach with
quantum correction factors, and the other is the reduced model approach which
describes the protein as an ensemble of normal modes interacting through
nonlinear coupling elements. Both methods result in estimates of the VER time
(sub ps) for a CD stretching mode in the protein at room temperature. The
theoretical predictions are in accord with the experimental data of Romesberg's
group. A perspective on future directions for the detailed study of time scales
and mechanisms for VER in proteins is presented.Comment: 12 pages, 4 figures, accepted for publication in PNA
Antiferromagnetic Order and Superconductivity in Sr4(Mg0.5-xTi0.5+x)2O6Fe2As2 with Electron Doping: 75As-NMR Study
We report an 75As-NMR study on iron (Fe)-based superconductors with thick
perovskitetype blocking layers Sr4(Mg0.5-xTi0.5+x)2O6Fe2As2 with x=0 and 0.2.
We have found that antiferromagnetic (AFM) order takes place when x=0, and
superconductivity (SC) emerges below Tc=36 K when x=0.2. These results reveal
that the Fe-pnictides with thick perovskitetype blocks also undergo an
evolution from the AFM order to the SC by doping electron carriers into FeAs
planes through the chemical substitution of Ti+4 ions for Mg+2 ions, analogous
to the F-substitution in LaFeAsO compound. The reason why the Tc=36 K when
x=0.2 being higher than the optimally electron-doped LaFeAsO with Tc=27 K
relates to the fact that the local tetrahedron structure of FeAs4 is optimized
for the onset of SC.Comment: 4 pages, 3 figures, 1 tabl
Detection of Diatomic Molecules in the Dust Forming Nova V2676 Oph
Novae are generally considered to be hot astronomical objects and show effective temperatures up to 10,000 K or higher at their visual maximum. But, it is theoretically predicted that the outer envelope of the nova outflow can become cool enough to form molecules that would be dissociated at high temperatures. We detected strong absorption bands of C2 and CN radicals in the optical spectrum of Nova V2676 Oph, a very slow nova with dust formation. This is the first report of the detection of C2 and the second one of CN in novae during outburst. Although such simple molecules are predicted to form in the envelope of the outflow based on previous studies, there are few reports of their detection. In the case of V2676 Oph, the presence of the molecular envelope is considered to be very transient, lasting several days only
Renormalization group approach to vibrational energy transfer in protein
Renormalization group method is applied to the study of vibrational energy
transfer in protein molecule. An effective Lagrangian and associated equations
of motion to describe the resonant energy transfer are analyzed in terms of the
first-order perturbative renormalization group theory that has been developed
as a unified tool for global asymptotic analysis. After the elimination of
singular terms associated with the Fermi resonance, amplitude equations to
describe the slow dynamics of vibrational energy transfer are derived, which
recover the result obtained by a technique developed in nonlinear optics [S.J.
Lade, Y.S. Kivshar, Phys. Lett. A 372 (2008) 1077].Comment: 11 page
Development of Time- and Energy-Resolved Synchrotron-Radiation-Based Mössbauer Spectroscopy
14th International Conference on Synchrotron Radiation Instrumentation (SRI 2021) 28.03.2022 - 01.04.2022 OnlineSynchrotron-radiation based Mössbauer spectroscopy has become a useful technique capable for investigating various Mössbauer isotopes. For a typical experimental setup, the information associated with the pulse height (that is, energy) in an avalanche photodiode (APD) detector has not been used effectively. By using a system for simultaneous measurement system of time and energy associated with the APD signal, a system for the time- and energy-resolved Mössbauer spectroscopy has been developed. In this system, the pulse height information was converted to the time information through an amplitude-to-time converter applied to one of the divided signals from the APD. The corresponding time information was processed separately from another one of the divided signals. Both signals are recorded by a multi-channel scaler in an event-by-event data acquisition process. The velocity information from the Mössbauer transducer was also recorded as a tag for each signal event. Thus, the Mössbauer spectra with any time- and energy-window can be reconstructed after the data collection process. This system can be used for many purposes in time- and energy-resolved Mössbauer spectroscopy, and shows significant promise for use with other fast detectors and for various types of experiments
Average Structures of a Single Knotted Ring Polymer
Two types of average structures of a single knotted ring polymer are studied
by Brownian dynamics simulations. For a ring polymer with N segments, its
structure is represented by a 3N -dimensional conformation vector consisting of
the Cartesian coordinates of the segment positions relative to the center of
mass of the ring polymer. The average structure is given by the average
conformation vector, which is self-consistently defined as the average of the
conformation vectors obtained from a simulation each of which is rotated to
minimize its distance from the average conformation vector. From each
conformation vector sampled in a simulation, 2N conformation vectors are
generated by changing the numbering of the segments. Among the 2N conformation
vectors, the one closest to the average conformation vector is used for one
type of the average structure. The other type of the averages structure uses
all the conformation vectors generated from those sampled in a simulation. In
thecase of the former average structure, the knotted part of the average
structure is delocalized for small N and becomes localized as N is increased.
In the case of the latter average structure, the average structure changes from
a double loop structure for small N to a single loop structure for large N,
which indicates the localization-delocalization transition of the knotted part.Comment: 15 pages, 19 figures, uses jpsj2.cl
Paramagnetic Phase of a Heavy-Fermion Compound, CeFePO, Probed by 57Fe M\"{o}ssbauer Spectroscopy
57Fe M\"{o}ssbauer spectroscopy was applied to an iron-based layered compound
CeFePO. At temperatures from 9.4 to 293 K, no magnetic splitting was observed
in the M\"ossbauer spectra of CeFePO indicating a paramagnetic phase of the Fe
magnetic sublattice. All the spectra were fitted with a small quadrupole
splitting, and the Debye temperature of CeFePO was found to be \sim448 K. The
isomer shift at room temperature, 0.32 mm/s, was almost equal to those of
LnFeAsO (Ln = La, Ce, Sm). Comparing s-electron density using the isomer shifts
and unit cell volumes, it was found that the Fe of CeFePO has a similar valence
state to other layered iron-based quaternary oxypnictides except LaFePO
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