Live neighbor-joining

Background: In phylogenetic reconstruction the result is a tree where all taxa are leaves and internal nodes are hypothetical ancestors. In a live phylogeny, both ancestral and living taxa may coexist, leading to a tree where internal nodes may be living taxa. The well-known Neighbor-Joining heuristic is largely used for phylogenetic reconstruction. Results: We present Live Neighbor-Joining, a heuristic for building a live phylogeny. We have investigated Live Neighbor-Joining on datasets of viral genomes, a plausible scenario for its application, which allowed the construction of alternative hypothesis for the relationships among virus that embrace both ancestral and descending taxa. We also applied Live Neighbor-Joining on a set of bacterial genomes and to sets of images and texts. Non-biological data may be better explored visually when their relationship in terms of content similarity is represented by means of a phylogeny. Conclusion: Our experiments have shown interesting alternative phylogenetic hypothesis for RNA virus genomes, bacterial genomes and alternative relationships among images and texts, illustrating a wide range of scenarios where Live Neighbor-Joining may be used

Preparation of catalysts based on iron(III) porphyrins heterogenized on silica obtained by the Sol-Gel process for hydroxylation and epoxidation reactions

Solid catalysts have been prepared by chemical interaction of iron(III) porphyrins with the surface of the pores of a silica matrix obtained by the sol-gel method. The presence of the complexes in the silica matrix and the morphology of the obtained particles were studied by UV-Vis spectroscopy, powder X-ray diffractometry, infrared spectroscopy, transmission electron microscopy, electron paramagnetic resonance and thermogravimetric analysis. The catalytic activity of the immobilized iron(III) porphyrins in the oxidation of (Z)-cyclooctene, cyclohexene and cyclohexane was evaluated in dichloromethane/acetonitrile 1:1 solvent mixture (v/v) using iodosylbenzene as oxidant. Results were compared with those achieved with the homogeneous counterparts

Treatment of effluents containing 2-chlorophenol by adsorption onto chemically and physically activated biochars

The application of adsorption using biochars for the remediation of effluents containing emerging contaminants, including chlorophenols, is a hotspot and trend development in the literature. This treatment is more interesting when using readily available wastes and at no cost, such as malt bagasse, for example. Here, the biochars were produced from malt bagasse, by physical and chemical activation (with CO2 and ZnCl2, respectively) and employed as adsorbents in the remediation of effluents containing 2-chlorophenol. Results revealed that the activated biochars have mesoporous structures and surface areas of 161 m² g-1 (CO2) and 545 m² g-1 (ZnCl2). For both activated biochars, adsorption of 2-chlorophenol was favored under acid conditions, with the highest adsorption capacities found using ZnCl2-activated biochar. The maximum adsorption capacity using ZnCl2-activated biochar was 150 mg g-1. The process was endothermic and spontaneous. ZnCl2-activated biochar exhibited an efficiency of 98% (using a dosage of 10 g L-1) in the treatment of industrial effluents containing 2-chlorophenol.La aplicación de la adsorción mediante biocarros para la remediación de efluentes que contienen contaminantes emergentes, incluidos los clorofenoles, es un punto crítico y un desarrollo de tendencia en la literatura. Este tratamiento es más interesante cuando se utilizan residuos fácilmente disponibles y sin costo, como el bagazo de malta, por ejemplo. Aquí, los biocarros se produjeron a partir de bagazo de malta, mediante activación física y química (con CO2 y ZnCl2, respectivamente) y se emplearon como adsorbentes en la remediación de efluentes que contienen 2-clorofenol. Los resultados revelaron que los biocarros activados tienen estructuras mesoporosas y áreas superficiales de 161 m² g-1 (CO2) y 545 m² g-1 (ZnCl2). Para ambos biocarros activados, la adsorción de 2-clorofenol se vio favorecida en condiciones ácidas, con las capacidades de adsorción más altas encontradas utilizando biocarbón activado con ZnCl2. La capacidad máxima de adsorción usando biocarbón activado con ZnCl2 fue de 150 mg g-1. El proceso fue endotérmico y espontáneo. El biocarbón activado con ZnCl2 exhibió una eficiencia del 98% (usando una dosis de 10 g L-1) en el tratamiento de efluentes industriales que contienen 2-clorofenol

Draft genome sequence of FT9, a novel Bacillus cereus strain isolated from a Brazilian Thermal Spring

O presente trabalho trata das bactérias formadoras da esporos, incluindo um patógeno presente na intoxicação alimentar e sistêmica e em infecções locais, trazendo uma sequência do genoma FT9

Predictive Models for the Diagnostic of Human Visceral Leishmaniasis in Brazil

Visceral leishmaniasis (VL) is a neglected tropical disease endemic to 65 countries, including Brazil, where the disease frequently occurs in remote locations and treatment is often performed on the basis of clinical suspicion. Predictive models based on scoring systems could be a helpful tool for the clinical management of VL. Based on clinical signs and symptoms, and five different serological tests of 213 patients with parasitologically confirmed (cases) and 119 with clinical suspicion of VL but with another confirmed etiology (non-cases), twelve prediction models using logistic regression and classification and regression trees (CART) for VL diagnosis were developed. The model composed of the clinical-laboratory variables and the rk39 rapid test showed the best performance in both logistic regression and CART (Sensitivity of 90.1% and specificity ranging from 97.2–97.4%). The scoring system is simple and based on the clinical-laboratory findings that are easily available in most clinical settings. The results suggest that those models might be useful in locations where access to available diagnostic methods is difficult, contributing to more efficient and more rational allocation of healthcare resources

The Peptide Salamandrin-I Modulates Components Involved in Pyroptosis and Induces Cell Death in Human Leukemia Cell Line HL-60

Amphibian secretions have been extensively investigated for the production of bioactive molecules. Salamandrin-I is an antioxidant peptide, isolated from the skin secretion of the fire salamander, that has induced no toxicity in microglia or erythrocytes. Importantly, the administration of antioxidants may constitute an adequate therapeutic approach to cancer treatment. Here, with the purpose of better characterizing the therapeutic potential of salamandrin-I, we investigated whether this antioxidant peptide also exerts anticancer activity, using the human leukemia cell line HL-60 as a cancer model. Salamandrin-I treatment induced a significant reduction in HL-60 proliferation, which was accompanied by cell cycle arrest. Furthermore, the peptide-induced cell death showed a significant increase in the LDH release in HL-60 cells. The cellular toxicity exerted by salamandrin-I is possibly related to pyroptosis, since the HL-60 cells showed loss of mitochondrial membrane potential and hyperexpression of inflammasome components following the peptide treatment. This is the first demonstration of the anticancer potential of the salamandrin-I peptide. Such results are important, as they offer relevant insights into the field of cancer therapy and allow the design of future bioactive molecules using salamandrin-I as a template

Comparisons of ball possession, match running performance, player prominence and team network properties according to match outcome and playing formation during the 2018 FIFA World Cup

The aims of this study conducted in national teams during the 2018 Russia FIFA World Cup were: i) to verify the possible variations of ball possession, match running performance, player prominence, team network properties according to match outcome and playing formation; and ii) to investigate the relationships between player prominence and total distance covered according to team ball possession. Sixty-one matches were analysed over the course of the competition (n=988 player observations). Running performance was examined using total distance covered in (TDIP) and out of possession, and that travelled in different speed-range categories. Player prominence (micro) and team network properties (macro) were obtained using social network analysis where completed passes between teammates were counted (n=28019 passes). Main findings were: i) with the exception of clustering coefficients which indicate the level of interconnectivity between close teammates (win = draw > loss), match outcome was unaffected by ball possession, running and network measures ; iii) teams employing a 1‒4‒2‒3‒1 formation reported greater values for ball possession, TDIP, and micro/macro network measures compared to those playing 1‒4‒4‒2 and 1‒4‒3‒3 formations; iv) TDIP tended to be related to most player prominence variables, even though the magnitude of coefficients varied considerably according to network measures and playing positions. This study has provided additional insights into elite soccer match-play performance