Yield losses caused by late blight (Phytophthora infestans (Mont.) de Bary) in potato crops in Ireland

peer-reviewedField experiments, using foliage blight susceptible cultivars, were conducted at Oak Park, Carlow from 1983 to 2007 to determine the loss in potato production caused by crop infection with Phytophthora infestans. In each of the 25 years an untreated control was compared with protectant and with systemic fungicide programmes to determine the effect of late blight on the defoliation percentage at the end of the season, the area under the disease progress curve, marketable tuber yield, total tuber yield and yield of blighted tubers. The earliest date of first recorded late blight was 22 June and the latest was 15 September, but in 15 of the 25 years, blight was first recorded between 17 July and 13 August. Disease reached epidemic proportions in all but 4 of the years. Yields varied considerably among years. The mean loss in total yield from not using a fungicide was 10.1 t/ha. Differences in yield were significant across the 25 seasons. No overall increase in aggressiveness of the pathogen could be detected over the 25-year period

Potato Breeding at Oak Park 2000-2006

End of project reportThe potato breeding programme at Oak Park was started in the 1960's and has consisted of a number of distinct phases. In the first phase the focus was on the evaluation of the main domestic and foreign varieties for suitability for the Irish market. This was followed by a breeding programme for the domestic market, with particular emphasis on the production of a blight resistant replacement for Kerr’s Pink. The emphasis then switched to breeding for the export market, with the focus on the UK and Mediterranean markets. Since then the breeding programme has been focused on both the domestic, processing and export markets. The process of breeding, testing and multiplying a new potato variety from the making of the initial cross until the new variety can be commercially grown takes about 15 years (see Appendix 1). This report covers the period 2001-2006 (RMIS NO 4720).Irish Potato Marketing Ltd.National Development Pla

Genetic Analysis of Irish Populations of Phytophthora Infestans

End of Project ReportPhytophthora infestans (Mont.) de Bary, the causal agent of potato late blight is best known for its role in the great Irish famine of 1845-1849 which resulted in the deaths of over 1 million people. Since then, the disease has become established in all potato growing countries and is the most important pathogen of potatoes worldwide. The appearance of resistance to the phenylamide fungicides in the late 1970’s indicated that populations of P. infestans were changing. An antiresistance strategy was developed for growers in an effort to reduce the spread of resistant strains. Subsequently the A2 mating type of the fungus was discovered in 1989 promoting fears that a super strain of the fungus could evolve through sexual reproduction. Populations of the fungus have been monitored from 1981 to 1998 for levels of phenylamide resistance and since 1988 for the A2 mating type. Physiological race surveys were conducted in 1983 and 1996. Prior to the 1980s no reliable methods were available for adequate identification of genotypes. Development of molecular markers specific to P. infestans has made this possible and a survey was conducted on isolates from the 1996 population. Results confirm that the anti-resistance strategy for phenylamide based fungicides has been effective in preventing the build up of metalaxyl resistant populations of P. infestans. During the 1990’s the distribution of phenylamide resistance has remained stable at about 50% of crops tested compared to a high of over 80 % in 1981. The level of A2 in the population has also fallen from a high of 35% of isolates tested in 1989 to a static level of 3-4 % in the 1990’s. Physiological race composition has become much more complex since 1983 and 16 different physiological races were found in Ireland in 1996. The population was dominated by race 3.4.7.10.11 which accounted for over 54% of isolates tested. This change has taken place without a corresponding change to varieties with a complex Rgene base. Twelve different genotypes of the fungus were uncovered using the multilocus probe RG57. Races of the fungus were independent of genotype. One particular genotype IE-2 was predominantly associated with phenylamide resistance. The low population diversity discovered suggests that sexual reproduction between A1 and A2 types has not been a major factor in disease epidemiology to date. Super strains similar to those identified in the USA could not be confirmed. The overall level of variation in the Irish isolates of Phytophthora infestans would confirm that the population has become progressively more diverse during the last forty years. However, the population is much less complex than that found in the highland tropics of central Mexico.Teagasc Walsh Fellowship Programm

Probing semiclassical analogue gravity in Bose--Einstein condensates with widely tunable interactions

Bose-Einstein condensates (BEC) have recently been the subject of considerable study as possible analogue models of general relativity. In particular it was shown that the propagation of phase perturbations in a BEC can, under certain conditions, closely mimic the dynamics of scalar quantum fields in curved spacetimes. In two previous articles [gr-qc/0110036, gr-qc/0305061] we noted that a varying scattering length in the BEC corresponds to a varying speed of light in the ``effective metric''. Recent experiments have indeed achieved a controlled tuning of the scattering length in Rubidium 85. In this article we shall discuss the prospects for the use of this particular experimental effect to test some of the predictions of semiclassical quantum gravity, for instance, particle production in an expanding universe. We stress that these effects are generally much larger than the Hawking radiation expected from causal horizons, and so there are much better chances for their detection in the near future.Comment: 18 pages; uses revtex4. V2: Added brief discussion of "Bose-Nova" phenomenon, and appropriate reference

Adult attachment style across individuals and role-relationships: Avoidance is relationship-specific, but anxiety shows greater generalizability

A generalisability study examined the hypotheses that avoidant attachment, reflecting the representation of others, should be more relationship-specific (vary across relationships more than across individuals), while attachment anxiety, reflecting self-representation, should be more generalisable across a person’s relationships. College students responded to 6-item questionnaire measures of these variables for 5 relationships (mother, father, best same-gender friend, romantic partner or best opposite-gender friend, other close person), on 3 (N = 120) or 2 (N = 77) occasions separated by a few weeks. Results supported the hypotheses, with the person variance component being larger than the relationship-specific component for anxiety, and the opposite happening for avoidance. Anxiety therefore seems not to be as relationship-specific as previous research suggested. Possible reasons for discrepancies between the current and previous studies are discussed

The BRST quantization and the no-ghost theorem for AdS_3

In our previous papers, we prove the no-ghost theorem without light-cone directions (hep-th/0005002, hep-th/0303051). We point out that our results are valid for more general backgrounds. In particular, we prove the no-ghost theorem for AdS_3 in the context of the BRST quantization (with the standard restriction on the spin). We compare our BRST proof with the OCQ proof and establish the BRST-OCQ equivalence for AdS_3. The key in both approaches lies in the certain structure of the matter Hilbert space as a product of two Verma modules. We also present the no-ghost theorem in the most general form.Comment: 22 pages, JHEP and AMS-LaTeX; v2 & 3: minor improvement

Superstrings on NS5 backgrounds, deformed AdS3 and holography

We study a non-standard decoupling limit of the D1/D5-brane system, which interpolates between the near-horizon geometry of the D1/D5 background and the near-horizon limit of the pure D5-brane geometry. The S-dual description of this background is actually an exactly solvable two-dimensional (worldsheet) conformal field theory: {null-deformed SL(2,R)} x SU(2) x T^4 or K3. This model is free of strong-coupling singularities. By a careful treatment of the SL(2,R), based on the better-understood SL(2,R) / U(1) coset, we obtain the full partition function for superstrings on SL(2,R) x SU(2) x K3. This allows us to compute the partition functions for the J^3 and J^2 current-current deformations, as well as the full line of supersymmetric null deformations, which links the SL(2,R) conformal field theory with linear dilaton theory. The holographic interpretation of this setup is a renormalization-group flow between the decoupled NS5-brane world-volume theory in the ultraviolet (Little String Theory), and the low-energy dynamics of super Yang--Mills string-like instantons in six dimensions.Comment: JHEP style, 59 pages, 1 figure; v2: minor changes, to appear in JHE

Patient free text reporting of symptomatic adverse events in cancer clinical research using the National Cancer Institute's Patient-Reported Outcomes version of the Common Terminology Criteria for Adverse Events (PRO-CTCAE)

Objective: The study sought to describe patient-entered supplemental information on symptomatic adverse events (AEs) in cancer clinical research reported via a National Cancer Institute software system and examine the feasibility of mapping these entries to established terminologies. Materials and Methods: Patients in 3 multicenter trials electronically completed surveys during cancer treatment. Each survey included a prespecified subset of items from the National Cancer Institute's Patient-Reported Outcomes version of the Common Terminology Criteria for Adverse Events (PRO-CTCAE). Upon completion of the survey items, patients could add supplemental symptomatic AE information in a free text box. As patients typed into the box, structured dropdown terms could be selected from the PRO-CTCAE item library or Medical Dictionary for Regulatory Activities (MedDRA), or patients could type unstructured free text for submission. Results: Data were pooled from 1760 participants (48% women; 78% White) who completed 8892 surveys, of which 2387 (26.8%) included supplemental symptomatic AE information. Overall, 1024 (58%) patients entered supplemental information at least once, with an average of 2.3 per patient per study. This encompassed 1474 of 8892 (16.6%) dropdowns and 913 of 8892 (10.3%) unstructured free text entries. One-third of the unstructured free text entries (32%) could be mapped post hoc to a PRO-CTCAE term and 68% to a MedDRA term. Discussion: Participants frequently added supplemental information beyond study-specific survey items. Almost half selected a structured dropdown term, although many opted to submit unstructured free text entries. Most free text entries could be mapped post hoc to PRO-CTCAE or MedDRA terms, suggesting opportunities to enhance the system to perform real-time mapping for AE reporting. Conclusions: Patient reporting of symptomatic AEs using a text box functionality with mapping to existing terminologies is both feasible and informative

Four simple recommendations to encourage best practices in research software [version 1; referees: awaiting peer review]

Scientific research relies on computer software, yet software is not always developed following practices that ensure its quality and sustainability. This manuscript does not aim to propose new software development best practices, but rather to provide simple recommendations that encourage the adoption of existing best practices. Software development best practices promote better quality software, and better quality software improves the reproducibility and reusability of research. These recommendations are designed around Open Source values, and provide practical suggestions that contribute to making research software and its source code more discoverable, reusable and transparent. This manuscript is aimed at developers, but also at organisations, projects, journals and funders that can increase the quality and sustainability of research software by encouraging the adoption of these recommendations. Keyword

Strong one-neutron emission from two-neutron unbound states in β decays of the r -process nuclei Ga 86,87

β-delayed one-neutron and two-neutron branching ratios (P1n and P2n) have been measured in the decay of A=84 to 87 Ga isotopes at the Radioactive-Isotope Beam Factory (RIBF) at the RIKEN Nishina Center using a high-efficiency array of He3 neutron counters (BRIKEN). Two-neutron emission was observed in the decay of Ga84,85,87 for the first time and the branching ratios were measured to be P2n=1.6(2)%,1.3(2)%, and 10.2(28)stat(5)sys%, respectively. One-neutron branching ratio of Ga87(P1n=81(9)stat(8)sys%) and half-life of 29(4) ms were measured for the first time. The branching ratios of Ga86 were also measured to be P1n=74(2)stat(8)sys% and 16.2(9)stat(6)sys% with better precision than a previous study. The observation that P1n>P2n for both Ga86,87 was unexpected and is interpreted as a signature of dominating one-neutron emission from the two-neutron unbound excited states in Ge86,87. In order to interpret the experimental results, shell-model and Hauser-Feshbach statistical model calculations of delayed particle and γ-ray emission probabilities were performed. This model framework reproduces the experimental results. The shell model alone predicts P2n significantly larger than P1n for the Ga87 decay, and it is necessary to invoke a statistical description to successfully explain the observation that P1n>P2n. Our new results demonstrate the relevance and importance of a statistical description of neutron emission for the prediction of the decay properties of multineutron emitters and that it must be included in the r-process modeling