Arabinogalactan glycosyltransferases:enzyme assay, protein-protein interaction, subcellular localization, and perspectives for application

Arabinogalactan proteins (AGPs) are abundant extracellular proteoglycans that are found in most plant species and involved in many cellular processes, such as cell proliferation and survival, pattern formation, and growth, and in plant microbe interaction. AGPs are synthesized by posttranslational O-glycosylation of proteins and attached glycan part often constitutes greater than 90% of the molecule. Subtle altered glycan structures during development have been considered to function as developmental markers on the cell surface, but little is known concerning the molecular mechanisms. My group has been working on glycosylation enzymes (glycosyltransferases) of AGPs to investigate glycan function of the molecule. This review summarizes the recent findings from my group as for AtGalT31A, AtGlcAT14A-C, and AtGalT29A of Arabidopsis thaliana with a specific focus on the (i) biochemical enzyme activities; (ii) subcellular compartments targeted by the glycosyltransferases; and (iii) protein-protein interactions. I also discuss application aspect of glycosyltransferase in improving AGP-based product used in industry, for example, gum arabic

<i>Arabidopsis thaliana</i> glucuronosyltransferase in family GT14

Arabinogalactan proteins are abundant cell-surface proteoglycans in plants and are involved in many cellular processes including somatic embryogenesis, cell-cell interactions, and cell elongation. We reported a glucuronosyltransferase encoded by Arabidopsis AtGlcAT14A, which catalyzes an addition of glucuronic acid residues to β-1,3- and β-1,6-linked galactans of arabinogalactan (Knoch et al. 2013). The knockout mutant of this gene resulted in the enhanced growth rate of hypocotyls and roots of seedlings, suggesting an involvement of AtGlcAT14A in cell elongation. AtGlcAt14A belongs to the family GT14 in the Carbohydrate Active Enzyme database (CAZy; www.cazy.org), in which a total of 11 proteins, including AtGLCAT14A, are classified from Arabidopsis thaliana. In this paper, we report the enzyme activities for the rest of the Arabidopsis GT14 isoforms, analyzed in the same way as for AtGlcAT14A. Evidently, two other Arabidopsis GT14 isoforms, At5g15050 and At2g37585, also possess the glucuronosyltransferase activity adding glucuronic acid residues to β-1,3- and β-1,6-linked galactans. Therefore, we named At5g15050 and At2g37585 as AtGlcAT14B and AtGlcAT14C, respectively

Dynamic feeder dyke systems in basaltic volcanoes

In this paper, we describe the 1809 eruption of Mt. Etna, Italy, which represents one historical rare case in which it is possible to observe details of the internal structure of the feeder system. This is possible thanks to the presence of two large pit craters located in the middle of the eruptive fracture field that allow studying a section of the shallow feeder system. Along the walls of one of these craters, we analysed well-exposed cross sections of the uppermost 15–20 m of the feeder system and related volcanic products. Here, we describe the structure, morphology and lithology of this portion of the 1809 feeder system, including the host rock which conditioned the propagation of the dyke, and compare the results with other recent eruptions. Finally, we propose the dynamic model of the magma behaviour inside a laterally-propagating feeder dyke, demonstrating how this dynamic triggered important changes in the eruptive style (from effusive/Strombolian to phreatomagmatic) during the same eruption. Our results are also useful for hazard assessment related to the development of flank eruptions, potentially the most hazardous type of eruption from basaltic volcanoes in densely urbanized areas, such as Mt. Etna

What Do We Know About Calderas?

The International Association of Volcanology and Chemistry of the Earth's Interior (IAVCEI) Commission on Collapse Calderas organized its fourth workshop in the Vulsini Calderas District, Italy (http://www.gvb‐csic.es/CCC.htm). Vulsini includes the Bolsena and Latera calderas, formed in the past 0.6 million years. It is a famous type locality where fundamental concepts concerning caldera collapse and eruptive dynamics have been proposed

Total energy calculation of high pressure selenium: The origin of incommensurate modulations in Se-IV and the instability of proposed Se-II

We present calculation of the high pressure crystal structures in selenium, including rational approximants to the recently reported incommensurate phases. We show how the incommensurate phases can be intuitively explained in terms of imaginary phonon frequencies arising from Kohn anomalies in the putative undistorted phase. We also find inconsistencies between the calculated and experimental Se-II phase - the calculations show it to be a metastable metal while the experiment finds a stable semiconductor. We propose that the experimentally reported structure is probably in error.Comment: 4 pages 4 figure

Arabinogalactan proteins:focus on carbohydrate active enzymes

Arabinogalactan proteins (AGPs) are a highly diverse class of cell surface proteoglycans that are commonly found in most plant species. AGPs play important roles in many cellular processes during plant development, such as reproduction, cell proliferation, pattern formation and growth, and in plant-microbe interaction. However, little is known about the molecular mechanisms of their function. Numerous studies using monoclonal antibodies that recognize different AGP glycan epitopes have shown the appearance of a slightly altered AGP glycan in a specific stage of development in plant cells. Therefore, it is anticipated that the biosynthesis and degradation of AGP glycan is tightly regulated during development. Until recently, however, little was known about the enzymes involved in the metabolism of AGP glycans. In this review, we summarize recent discoveries of carbohydrate active enzymes (CAZy; http://www.cazy.org/) involved in the biosynthesis and degradation of AGP glycans, and we discuss the biological role of these enzymes in plant development

Magmatic overpressures, volatile exsolution and potential explosivity of fissure eruptions inferred via dike aspect ratios

Buoyant magmas abundant in exsolved volatiles (bubbles) drive the rapid upward-propagation of feeder dikes from magma chambers. The consequence of a feeder dike reaching the surface can result in an explosive volcanic eruption depending, partly, on the retention of volatiles. Therefore, timely detection of the vesicularity and overpressure of the magma during feeder dike ascent is critical for the prediction of the explosivity of any future eruption. In this study, we evaluated the explosivity of eruptions based on field investigations of the erupted products and the overpressure of magma in the conduit based on the dimensions of exposed feeder dikes. We found a positive correlation between the explosivity of eruptions and the magma overpressure generated in the conduit during recent fissure eruptions of Miyakejima volcano. Because the buoyancy of low-density magma produces positive overpressure at the dike’s top, feeder dikes with highly-vesiculated magmas possess high amounts of overpressure. An enlargement of the opening width of a feeder dike by magmatic overpressure results in a higher flux of vesiculated magma, which causes vigorous explosive activity. Our results suggest the possibility of forecasting the explosivity of an impending eruption if the width (or opening) of an ascending feeder dike is monitored in real-time through measurements of ground deformation and seismicity induced by the dike