Polymers in linear shear flow: a numerical study

We study the dynamics of a single polymer subject to thermal fluctuations in a linear shear flow. The polymer is modeled as a finitely extendable nonlinear elastic FENE dumbbell. Both orientation and elongation dynamics are investigated numerically as a function of the shear strength, by means of a new efficient integration algorithm. The results are in agreement with recent experiments.Comment: 7 pages, see also the preceding paper (http://arxiv.org/nlin.CD/0503028

Lecture Course “Modern Physics”

In the paper, the structure of the lecture course “Modern Physics” is described in detail. The course is based on a logical presentation of modern ideas about quantum-, atomic-, nuclear-, and molecular physics as well as astrophysics. A special attention is paid to a relatively new interdisciplinary research field, namely the physics of open systems, and to the study of clusters as one of the most promising scientific areas. Separate chapters of the textbook are devoted to nonlinear optics, quantum information, structure and dynamics of molecules. The fundamental laws and concepts of modern physics, their relationship and origin are comprehensively discussed. It is underlined that this lecture course is intended, first of all, for students of technical universities, postgraduate students of relevant specialties, as well as professors of vocation-related subjects. The inclusion of new sections of physics in the curricula of universities is rationalized, in particular, by the fact that physics is closely related to engineering. Due to this fact, the important role that physics plays in society becomes especially evident. The paper may also be of interest to those who are fond of physics and its state-of-the art

Stretching of polymers around the Kolmogorov scale in a turbulent shear flow

We present numerical studies of stretching of Hookean dumbbells in a turbulent Navier-Stokes flow with a linear mean profile, =Sy. In addition to the turbulence features beyond the viscous Kolmogorov scale \eta, the dynamics at the equilibrium extension of the dumbbells significantly below eta is well resolved. The variation of the constant shear rate S causes a change of the turbulent velocity fluctuations on all scales and thus of the intensity of local stretching rate of the advecting flow. The latter is measured by the maximum Lyapunov exponent lambda_1 which is found to increase as \lambda_1 ~ S^{3/2}, in agreement with a dimensional argument. The ensemble of up to 2 times 10^6 passively advected dumbbells is advanced by Brownian dynamics simulations in combination with a pseudospectral integration for the turbulent shear flow. Anisotropy of stretching is quantified by the statistics of the azimuthal angle $\phi$ which measures the alignment with the mean flow axis in the x-y shear plane, and the polar angle theta which determines the orientation with respect to the shear plane. The asymmetry of the probability density function (PDF) of phi increases with growing shear rate S. Furthermore, the PDF becomes increasingly peaked around mean flow direction (phi= 0). In contrast, the PDF of the polar angle theta is symmetric and less sensitive to changes of S.Comment: 16 pages, 14 Postscript figures (2 with reduced quality

Lifespan Extension Conferred by Endoplasmic Reticulum Secretory Pathway Deficiency Requires Induction of the Unfolded Protein Response

Cells respond to accumulation of misfolded proteins in the endoplasmic reticulum (ER) by activating the unfolded protein response (UPR) signaling pathway. The UPR restores ER homeostasis by degrading misfolded proteins, inhibiting translation, and increasing expression of chaperones that enhance ER protein folding capacity. Although ER stress and protein aggregation have been implicated in aging, the role of UPR signaling in regulating lifespan remains unknown. Here we show that deletion of several UPR target genes significantly increases replicative lifespan in yeast. This extended lifespan depends on a functional ER stress sensor protein, Ire1p, and is associated with constitutive activation of upstream UPR signaling. We applied ribosome profiling coupled with next generation sequencing to quantitatively examine translational changes associated with increased UPR activity and identified a set of stress response factors up-regulated in the long-lived mutants. Besides known UPR targets, we uncovered up-regulation of components of the cell wall and genes involved in cell wall biogenesis that confer resistance to multiple stresses. These findings demonstrate that the UPR is an important determinant of lifespan that governs ER stress and identify a signaling network that couples stress resistance to longevity

Використання ефекту мікрокоагуляції для керування зв'язуванням води у гетерогенній системі поліметилсилоксан/кремнезем/вода

The binding of water in heterogeneous systems containing polymethylsiloxane (PMS) pyrogenic nanosilica (A-300) water and the surface-active substance decametoxin (DMT) was studied. Composite systems were created using metered mechanical loads. The low-temperature 1H NMR spectroscopy was used to measure the structural and thermodynamic parameters of bound water. It is shown that when filling PMS interparticle gaps with hydrocompaction, the interfacial energy of water in the interparticle gaps of hydrophobic PMS with the same hydration is twice as large as the interfacial energy of water in hydrophilic silica A-300. This is due to the smaller linear dimensions of the interparticle gaps in the ICP compared with the A-300. In the composite system, A-300/PMS/DMT/H2O, a non-additive growth of water binding energy is observed, which is likely due to the formation, under the influence of mechanical load in the presence of water, of microheterogeneous sites, consisting mainly of the hydrophobic and hydrophilic components (microcoagulation). Thus, using mechanical loads, you can control the adsorption properties of composite systems.Вивчено зв'язування води в гетерогенних системах, що містять поліметилсилоксан, високодисперсний аморфний кремнезем, воду і поверхнево-активну речовину – декаметоксин. Композитні системи створювалися при використанні дозованих механічних навантажень. Методом низькотемпературної 1Н ЯМР-спектроскопії вимірювалися структурні і термодинамічні параметри зв'язаної води. Показано, що при заповненні міжчастинкових зазорів поліметилсилоксану способом гідроущільнення, міжфазна енергія води при однаковій гідратованості вдвічі перевищує міжфазну енергію води в гідрофільному кремнеземі. Це пов'язано з меншими лінійними розмірами міжчастинкових зазорів в поліметилсилоксані порівняно з кремнеземом. В композитній системі, кремнезем/поліметилсилоксан/декаметоксин/вода спостерігається неадитивне зростання енергії зв'язування води, яке, ймовірно, обумовлене формуванням, під впливом механічного навантаження в присутності води, мікрогетерогенних ділянок, що складаються переважно з гідрофобної і гідрофільної компонент (мікрокоагуляція). Таким чином, за допомогою механічних навантажень можна керувати адсорбційними властивостями композитних систе

Elastic turbulence in curvilinear flows of polymer solutions

Following our first report (A. Groisman and V. Steinberg, \sl Nature $\bf 405$, 53 (2000)) we present an extended account of experimental observations of elasticity induced turbulence in three different systems: a swirling flow between two plates, a Couette-Taylor (CT) flow between two cylinders, and a flow in a curvilinear channel (Dean flow). All three set-ups had high ratio of width of the region available for flow to radius of curvature of the streamlines. The experiments were carried out with dilute solutions of high molecular weight polyacrylamide in concentrated sugar syrups. High polymer relaxation time and solution viscosity ensured prevalence of non-linear elastic effects over inertial non-linearity, and development of purely elastic instabilities at low Reynolds number (Re) in all three flows. Above the elastic instability threshold, flows in all three systems exhibit features of developed turbulence. Those include: (i)randomly fluctuating fluid motion excited in a broad range of spatial and temporal scales; (ii) significant increase in the rates of momentum and mass transfer (compared to those expected for a steady flow with a smooth velocity profile). Phenomenology, driving mechanisms, and parameter dependence of the elastic turbulence are compared with those of the conventional high Re hydrodynamic turbulence in Newtonian fluids.Comment: 23 pages, 26 figure

Fundamental scaling laws of on-off intermittency in a stochastically driven dissipative pattern forming system

Noise driven electroconvection in sandwich cells of nematic liquid crystals exhibits on-off intermittent behaviour at the onset of the instability. We study laser scattering of convection rolls to characterize the wavelengths and the trajectories of the stochastic amplitudes of the intermittent structures. The pattern wavelengths and the statistics of these trajectories are in quantitative agreement with simulations of the linearized electrohydrodynamic equations. The fundamental $\tau^{-3/2}$ distribution law for the durations $\tau$ of laminar phases as well as the power law of the amplitude distribution of intermittent bursts are confirmed in the experiments. Power spectral densities of the experimental and numerically simulated trajectories are discussed.Comment: 20 pages and 17 figure

High-sensitivity AC-charge detection with a MHz-frequency fluxonium qubit

Owing to their strong dipole moment and long coherence times, superconducting qubits have demonstrated remarkable success in hybrid quantum circuits. However, most qubit architectures are limited to the GHz frequency range, severely constraining the class of systems they can interact with. The fluxonium qubit, on the other hand, can be biased to very low frequency while being manipulated and read out with standard microwave techniques. Here, we design and operate a heavy fluxonium with an unprecedentedly low transition frequency of $1.8~\mathrm{MHz}$. We demonstrate resolved sideband cooling of the ``hot'' qubit transition with a final ground state population of $97.7~\%$, corresponding to an effective temperature of $23~\mu\mathrm{K}$. We further demonstrate coherent manipulation with coherence times $T_1=34~\mu\mathrm{s}$, $T_2^*=39~\mu\mathrm{s}$, and single-shot readout of the qubit state. Importantly, by directly addressing the qubit transition with a capacitively coupled waveguide, we showcase its high sensitivity to a radio-frequency field. Through cyclic qubit preparation and interrogation, we transform this low-frequency fluxonium qubit into a frequency-resolved charge sensor. This method results in a charge sensitivity of $33~\mu\mathrm{e}/\sqrt{\mathrm{Hz}}$, or an energy sensitivity (in joules per hertz) of $2.8~\hbar$. This method rivals state-of-the-art transport-based devices, while maintaining inherent insensitivity to DC charge noise. The high charge sensitivity combined with large capacitive shunt unlocks new avenues for exploring quantum phenomena in the $1-10~\mathrm{MHz}$ range, such as the strong-coupling regime with a resonant macroscopic mechanical resonator

The Yeast La Related Protein Slf1p Is a Key Activator of Translation during the Oxidative Stress Response

The mechanisms by which RNA-binding proteins control the translation of subsets of mRNAs are not yet clear. Slf1p and Sro9p are atypical-La motif containing proteins which are members of a superfamily of RNA-binding proteins conserved in eukaryotes. RIP-Seq analysis of these two yeast proteins identified overlapping and distinct sets of mRNA targets, including highly translated mRNAs such as those encoding ribosomal proteins. In paralell, transcriptome analysis of slf1Δ and sro9Δ mutant strains indicated altered gene expression in similar functional classes of mRNAs following loss of each factor. The loss of SLF1 had a greater impact on the transcriptome, and in particular, revealed changes in genes involved in the oxidative stress response. slf1Δ cells are more sensitive to oxidants and RIP-Seq analysis of oxidatively stressed cells enriched Slf1p targets encoding antioxidants and other proteins required for oxidant tolerance. To quantify these effects at the protein level, we used label-free mass spectrometry to compare the proteomes of wild-type and slf1Δ strains following oxidative stress. This analysis identified several proteins which are normally induced in response to hydrogen peroxide, but where this increase is attenuated in the slf1Δ mutant. Importantly, a significant number of the mRNAs encoding these targets were also identified as Slf1p-mRNA targets. We show that Slf1p remains associated with the few translating ribosomes following hydrogen peroxide stress and that Slf1p co-immunoprecipitates ribosomes and members of the eIF4E/eIF4G/Pab1p ‘closed loop’ complex suggesting that Slf1p interacts with actively translated mRNAs following stress. Finally, mutational analysis of SLF1 revealed a novel ribosome interacting domain in Slf1p, independent of its RNA binding La-motif. Together, our results indicate that Slf1p mediates a translational response to oxidative stress via mRNA-specific translational control

The waking brain: an update

Wakefulness and consciousness depend on perturbation of the cortical soliloquy. Ascending activation of the cerebral cortex is characteristic for both waking and paradoxical (REM) sleep. These evolutionary conserved activating systems build a network in the brainstem, midbrain, and diencephalon that contains the neurotransmitters and neuromodulators glutamate, histamine, acetylcholine, the catecholamines, serotonin, and some neuropeptides orchestrating the different behavioral states. Inhibition of these waking systems by GABAergic neurons allows sleep. Over the past decades, a prominent role became evident for the histaminergic and the orexinergic neurons as a hypothalamic waking center