Weiblen Data Set

Weiblen Data Se

CecropieaeMorphology

Description of morphological characters used in phylogenetic reconstruction of Cecropieae tribe (Urticaceae

Appendix A. A description of Euphorbiaceae phylogeny.

A description of Euphorbiaceae phylogeny

Cecropieae morphological matrix

Matrix used for tree analysis of Cecropieae based on characters outlined in Cecropieae morphology

Supplement 1. Code for tree-building R function, along with example data and code for use.

<h2>File List</h2><div> <p><a href="Supplement-tc2ape-script.R">Supplement-tc2ape-script.R</a> (MD5: 4d291f1a0c41b2e9f75dbb6c322105d0)   R function to build tree<br> <a href="Supplement-build-tree-script.R">Supplement-build-tree-script.R</a> (MD5: 393ce10283ab945ed0cb151556d7c8fc)   example use of R function<br> <a href="Hemiptera-taxon-container.csv">Hemiptera-taxon-container.csv</a> (MD5: 86b7e9fee0fe43aeefbdd8212ae1cbe9)   example data for R function </p> </div><h2>Description</h2><div> <p>The R function used to assemble hierarchical relationships ("trees") from workflow used in the manuscript is provided. The Hemiptera data set provided shows how data entry is organized in a simple two-column table, with all taxa and higher clades listed exactly once in the left column, and all higher nodes (non-tips) listed at least once in the right column. The "build-tree-script" demonstrates how the data set and custom function are combined in practice to produce a usable tree.</p> </div

NovotnyEtAl2011DryadData

This is the plant x herbivore data matrix for 38 woody plant species from a lowland rainforest in Papua New Guinea and their folivorous insect herbivores. The herbivores were sampled from 1,500 m2 of foliage area for each plant species. The matrix includes the number of individuals of each herbivore species on each plant species, except for singleton records (i.e., combinations of a particular herbivore species feeding on a particular plant species supported by only a single individual) which were excluded. All records in the matrix are feeding records, verified either by rearing of larvae or no-choice feeding experiments for adults. Each herbivore species is denoted by a species code, identified as far as possible, and assigned to its feeding guild. The number of individuals (ni.) and the number of host plant species (pi) are reported for each species. These are original data obtained by research in the field. This data set is associated with the paper Insects on Plants: Explaining the Paradox of Low Diversity within Specialist Herbivore Guilds by V. Novotny, S. E. Miller, J. Hrcek, L. Baje, Y. Basset, O. T. Lewis, A. J. A. Stewart and G. D. Weiblen published in the American Naturalist. This paper includes the definition of each herbivore guild, phylogeny of the plant species, and the information on the depositories of the plant and insect vouchers documenting the data

chromosome 8

Concatenated alignment of single-nucleotide variants from chromosome 8 in 29 taxa of genus Medicago (Fabaceae), collected by whole-genome resequencing and alignment to the M. truncatula reference genome

Figure S03

Genomic location of sliding windows with strong (≥ 0.95) posterior support for the four topological rearrangements most commonly given strong support by individual sliding windows. Filled circles indicate the weighted conflict score for the consensus tree estimated from a given sliding window of 500 consecutive sites; red circles indicate windows whose consensus topology strongly supports the given rearrangement

chromosome 7

Concatenated alignment of single-nucleotide variants from chromosome 7 in 29 taxa of genus Medicago (Fabaceae), collected by whole-genome resequencing and alignment to the M. truncatula reference genome

chromosome 2

Concatenated alignment of single-nucleotide variants from chromosome 2 in 29 taxa of genus Medicago (Fabaceae), collected by whole-genome resequencing and alignment to the M. truncatula reference genome