Multi-scale digital soil mapping with deep learning

We compared different methods of multi-scale terrain feature construction and their relative effectiveness for digital soil mapping with a Deep Learning algorithm. The most common approach for multi-scale feature construction in DSM is to filter terrain attributes based on different neighborhood sizes, however results can be difficult to interpret because the approach is affected by outliers. Alternatively, one can derive the terrain attributes on decomposed elevation data, but the resulting maps can have artefacts rendering the approach undesirable. Here, we introduce ‘mixed scaling’ a new method that overcomes these issues and preserves the landscape features that are identifiable at different scales. The new method also extends the Gaussian pyramid by introducing additional intermediate scales. This minimizes the risk that the scales that are important for soil formation are not available in the model. In our extended implementation of the Gaussian pyramid, we tested four intermediate scales between any two consecutive octaves of the Gaussian pyramid and modelled the data with Deep Learning and Random Forests. We performed the experiments using three different datasets and show that mixed scaling with the extended Gaussian pyramid produced the best performing set of covariates and that modelling with Deep Learning produced the most accurate predictions, which on average were 4–7% more accurate compared to modelling with Random Forests

Chapitre 7. Stocks de carbone dans les éco- et agrosystèmes à Madagascar

Introduction La quantification du carbone organique des sols (COS) des différents agrosystèmes et écosystèmes naturels est essentielle afin de mieux orienter les stratégies d’adaptation et d’atténuation du changement climatique à différentes échelles : locale, nationale et internationale. Pour un écosystème donné, le COS peut être contenu dans différents compartiments : la biomasse aérienne, la litière, les bois morts, les racines et les sols. Les sols jusqu’à 1 m de profondeur sont reconnus ..

Predicting plant diversity patterns in Madagascar : understanding the effects of climate and land cover change in a biodiversity hotspot

Climate and land cover change are driving a major reorganization of terrestrial biotic communities in tropical ecosystems. In an effort to understand how biodiversity patterns in the tropics will respond to individual and combined effects of these two drivers of environmental change, we use species distribution models (SDMs) calibrated for recent climate and land cover variables and projected to future scenarios to predict changes in diversity patterns in Madagascar. We collected occurrence records for 828 plant genera and 2186 plant species. We developed three scenarios, (i.e., climate only, land cover only and combined climate-land cover) based on recent and future climate and land cover variables. We used this modelling framework to investigate how the impacts of changes to climate and land cover influenced biodiversity across ecoregions and elevation bands. There were large-scale climate- and land cover-driven changes in plant biodiversity across Madagascar, including both losses and gains in diversity. The sharpest declines in biodiversity were projected for the eastern escarpment and high elevation ecosystems. Sharp declines in diversity were driven by the combined climate-land cover scenarios; however, there were subtle, region-specific differences in model outputs for each scenario, where certain regions experienced relatively higher species loss under climate or land cover only models. We strongly caution that predicted future gains in plant diversity will depend on the development and maintenance of dispersal pathways that connect current and future suitable habitats. The forecast for Madagascar's plant diversity in the face of future environmental change is worrying: regional diversity will continue to decrease in response to the combined effects of climate and land cover change, with habitats such as ericoid thickets and eastern lowland and sub-humid forests particularly vulnerable into the future

Carbone des sols en Afrique

Les sols sont une ressource essentielle à préserver pour la production d’aliments, de fibres, de biomasse, pour la filtration de l’eau, la préservation de la biodiversité et le stockage du carbone. En tant que réservoirs de carbone, les sols sont par ailleurs appelés à jouer un rôle primordial dans la lutte contre l’augmentation de la concentration de gaz à effet de serre. Ils sont ainsi au centre des objectifs de développement durable (ODD) des Nations unies, notamment les ODD 2 « Faim zéro », 13 « Lutte contre le changement climatique », 15 « Vie terrestre », 12 « Consommation et production responsables » ou encore 1 « Pas de pauvreté ». Cet ouvrage présente un état des lieux des sols africains dans toute leur diversité, mais au-delà, il documente les capacités de stockage de carbone selon les types de sols et leurs usages en Afrique. Il propose également des recommandations autour de l’acquisition et de l’interprétation des données, ainsi que des options pour préserver, voire augmenter les stocks de carbone dans les sols. Tous les chercheurs et acteurs du développement impliqués dans les recherches sur le rôle du carbone des sols sont concernés par cette synthèse collective. Fruit d’une collaboration entre chercheurs africains et européens, ce livre insiste sur la nécessité de prendre en compte la grande variété des contextes agricoles et forestiers africains pour améliorer nos connaissances sur les capacités de stockage de carbone des sols et lutter contre le changement climatique

Estimating deforestation in tropical humid and dry forests in Madagascar from 2000 to 2010 using multi-date Land sat satellite images and the random farests classifier

High resolution and low uncertainty deforestation maps covering large spatial areas in tropical countries are needed to plan efficient forest conservation and management programs such as REDD+ (Reducing Emissions from Deforestation and Forest Degradation). Using an open-source free software (R, GRASS and QGis) and an original statistical approach combining multi-date land cover observations based on Landsat satellite images and the random forests classifier, we obtained up-to-date deforestation maps for the periods 2000-2005 and 2005-2010 with a minimum mapping unit of 036 ha for 7.7 M hectares, i.e. 40.3% of the tropical humid forest and 20.6% of the tropical dry forest in Madagascar. Uncertainty in deforestation on the maps was calculated by comparing the results of the classification to more than 30,000 visual interpretation points on a regular grid. We assessed accuracy on a per-pixel basis (confusion matrix) and by measuring the relative surface difference between wall-to-wall approach and point sampling. At the pixel level, user accuracy was 84.7% for stable land cover and 60.7% for land cover change. On average for the whole study area, we obtained a relative difference of 2% for stable land cover categories and 21.1% land cover change categories respectively between the wall-to-wall and the point sampling approach. Depending on the study area, our conservative assessment of annual deforestation rates ranged from 0.93 to 233%.yr(-1) for the humid forest and from 0.46 to 1.17%.yr(-1) for the dry forest. Here we describe an approach to obtain deforestation maps with reliable uncertainty estimates that can be transposed to other regions in the tropical world