The need for large-scale, integrated studies of biodiversity - the experience of the program for biodiversity research in Brazilian Amazonia

Brazilian Amazonia covers around 5 million km2. If we could sample it regularly, with one sample for each 1 degree cell (10,000 km2), we would need 500 sample sites. It is clear that financial costs limit the amplitude of biodiversity studies. As the area to be explored is so large, financial resources limited, and demands varied, a program on Amazonian biodiversity research must be cost-effective. Integrated and large-scale studies, using standardized protocols represent the only way to achieve these goals. In this review, we report on experience gathered at two model sites in Amazonia, Reserva Ducke and Alter do Chão, which were used to design the RAPELD system, which is the principle basis for the Inventory Component of the Program on Biodiversity Research (PPBio) of the Brazilian government (http://ppbio.inpa.gov.br). We address the following issues: 1) how scale, size, shape and distribution of sampling units affect the outcome of biodiversity studies, in terms of the estimation of biotic complementarity between sites, estimation of organismal abundance, and modeling of species distributions; 2) how different sampling needs, from different taxonomic groups, can be adjusted in integrated protocols; 3) how costs can be reduced through sub-sampling. Use of the method in other research sites in Amazonia is being conducted successfully, and a large network of standardized plots is being constructed (see http://ppbio.inpa.gov.br). We also show that other methodologies currently used in large-scale biodiversity studies can be integrated into the RAPELD design. © 2010 ABECO

Redução de esforço amostral vs. retenção de informação em inventários de pteridófitas na Amazônia Central

The large area covered by the Amazonian domain and the limited financial support for biodiversity studies demand efficient research programs. Aiming to evaluate the consequences of reduced sampling effort on the retention of ecological information, we tested how differences in plot width affect the perceived relationship between environmental variation and the composition of the pteridophyte community in Central Amazonia. Measures of slope, canopy openness and soil clay content were taken in 37 terra-firme forest plots. All pteridophyte individuals were identified and mapped according to three sample strips. We tested the effects of environmental variables on pteridophyte composition of 250 × 2.5 meters-plots and on sub-samples of reduced width. The reduction of plot width from 2.5 to 1 m (60% reduction in sampling effort) corresponded to a reduction of 24% of the project’s costs concerning field work expenses. This would reduce the number of sampled species from 52 to 44. The reduction of 20% plot width (from 2.5 to 2 m) would cause a reduction of two (4%) sampled species and a reduction of 8% of the costs. For all tested plot widths, community composition was associated with soil clay content and was not associated with the terrain slope. The effect of canopy openness on pteridophyte species composition was not consistent among sample sizes. These may be related to the relatively lower importance of light availability in determining community structure at the studied spatial scale. We concluded that the smallest plots were informative enough to detect the main gradients of composition and their association to environmental factors. This would allow a reduction in total costs, or the allocation of available budget to more plots, which could increase the power of the statistical analyses, reduce the confidence intervals and increase probability of detecting more species. © 2007, Universidade Estadual de Campinas UNICAMP. All rights reserved

Redução de esforço amostral vs. Retenção de informação em inventários de pteridófitas na Amazônia Central

The large area covered by the Amazonian domain and the limited financial support for biodiversity studies demand efficient research programs. Aiming to evaluate the consequences of reduced sampling effort on the retention of ecological information, we tested how differences in plot width affect the perceived relationship between environmental variation and the composition of the pteridophyte community in Central Amazonia. Measures of slope, canopy openness and soil clay content were taken in 37 terra-firme forest plots. All pteridophyte individuals were identified and mapped according to three sample strips. We tested the effects of environmental variables on pteridophyte composition of 250 × 2.5 meters-plots and on sub-samples of reduced width. The reduction of plot width from 2.5 to 1 m (60% reduction in sampling effort) corresponded to a reduction of 24% of the project’s costs concerning field work expenses. This would reduce the number of sampled species from 52 to 44. The reduction of 20% plot width (from 2.5 to 2 m) would cause a reduction of two (4%) sampled species and a reduction of 8% of the costs. For all tested plot widths, community composition was associated with soil clay content and was not associated with the terrain slope. The effect of canopy openness on pteridophyte species composition was not consistent among sample sizes. These may be related to the relatively lower importance of light availability in determining community structure at the studied spatial scale. We concluded that the smallest plots were informative enough to detect the main gradients of composition and their association to environmental factors. This would allow a reduction in total costs, or the allocation of available budget to more plots, which could increase the power of the statistical analyses, reduce the confidence intervals and increase probability of detecting more species. © 2007, Universidade Estadual de Campinas UNICAMP. All rights reserved

The importance of hydraulic architecture to the distribution patterns of trees in a central Amazonian forest

Species distributions and assemblage composition may be the result of trait selection through environmental filters. Here, we ask whether filtering of species at the local scale could be attributed to their hydraulic architectural traits, revealing the basis of hydrological microhabitat partitioning in a Central Amazonian forest. We analyzed the hydraulic characteristics at tissue (anatomical traits, wood specific gravity (WSG)), organ (leaf area, specific leaf area (SLA), leaf area : sapwood area ratio) and whole-plant (height) levels for 28 pairs of congeneric species from 14 genera restricted to either valleys or plateaus of a terra-firme forest in Central Amazonia. On plateaus, species had higher WSG, but lower mean vessel area, mean vessel hydraulic diameter, sapwood area and SLA than in valleys; traits commonly associated with hydraulic safety. Mean vessel hydraulic diameter and mean vessel area increased with height for both habitats, but leaf area and leaf area : sapwood area ratio investments with tree height declined in valley vs plateau species. [Correction added after online publication 29 March 2017: the preceding sentence has been reworded.] Two strategies for either efficiency or safety were detected, based on vessel size or allocation to sapwood. In conclusion, contrasting hydrological conditions act as environmental filters, generating differences in species composition at the local scale. This has important implications for the prediction of species distributions under future climate change scenarios. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trus

The importance of soils in predicting the future of plant habitat suitability in a tropical forest

Aims: Assessment of the future of biodiversity under climate change has been based on climate-only models. We investigated the effects of including soil information when predicting future suitable areas for selected plant species in Amazonia. Methods: We modelled current and future suitable habitats for 35 plant species and compared results of climate-only models with those obtained when climatic and edaphic variables were included. We considered six climatic scenarios for 2050 using different algorithms and projections of atmospheric CO2 concentration. Results: Twenty-five species distribution models had an AUC > 0.69. Out of those, edaphic variables had the greatest contribution in 11 species models, while climatic variables were more important for 14 species. The inclusion of soil variables affected the size and shape of predicted suitable areas, especially in future models. For nearly half of the species, the size of future suitable areas were smaller in climate+soil models than predicted by climate-only models. Area reduction was more extreme in future scenarios with the higher level of CO2 concentration. Conclusions: Our results highlight the importance of moving beyond climatic scenarios when modelling biodiversity responses to climate change. Failure to include soils in the models can overestimate future habitat suitability for many plant species. © 2019, The Author(s)

Riqueza de insetos galhadores associados a habitats de sub-bosque com diferentes topografias e níveis de estresse hídrico e nutricional em uma floresta da Amazônia Central, Brasil

Topographic gradients in terra firme forests are associated with pronounced changes in soil texture, soil nutrients and distance to the water-table, thereby creating different hydric and nutritional conditions for plants and their associated herbivore community. The aim of this study was to investigate galling species and host plant richness and gall species composition across topographic habitats differing in nutrient and water stress in the Brazilian Amazon rainforest. Nineteen 250 x 3 m plots were randomly sampled in the valley, slope, plateau-slope transition, and plateau habitats in terra firme forests. All individual dicotyledonous plants 1 to 3 meters high were examined for the presence of insect galls. Galling species and host plant richness differed significantly among the studied habitats and were higher in slope habitats (drier habitats), as expected. More humid areas (valleys) showed the lowest richness of galling species, and a lower number of understory host plants. PERMANOVA and PERMDISP results demonstrated that the gall species composition differed significantly in the valley, slope, plateau-slope transition, and plateau areas. However, these structural differences in species composition could be due to unequal dispersion of variability among forest habitats. Our data suggested that spatial heterogeneity, such as a mosaic of local water status and nutrient availability resulting from the topographic conditions, can affect host plants and their associated galling insects.As variações topográficas encontradas nas florestas de terra firme são acompanhadas por fortes mudanças no conteúdo de argila e concentração de nutrientes do solo, criando, portanto, diferentes condições hídricas e nutricionais para plantas e as comunidades de herbívoros associadas. O objetivo do presente estudo foi avaliar a riqueza e composição de espécies de insetos galhadores e suas plantas hospedeiras ao longo de um gradiente topográfico com habitats que diferem quanto ao estresse hídrico e nutricional. Dezenove parcelas de 250 x 3 m foram estabelecidos aleatoriamente em habitats de vertente, platô, transição platô-vertente e baixio, claramente distintos em áreas de terra firme. Todas as dicotiledôneas com 1 a 3 metros de altura foram examinadas quanto à presença de galhas de insetos. As galhas encontradas foram coletadas e insetos galhadores foram classificados em morfoespécies. A riqueza de galhadores e de plantas hospedeiras diferiram significativamente entre os habitats estudados, e como esperado, foi maior no habitat de vertente. As áreas mais úmidas (baixios) apresentaram menor riqueza de plantas hospedeiras no sub-bosque e, conseqüentemente, um número menor de espécies de galhadores. Os resultados das análises de PERMANOVA e PERMDISP demonstraram que a composição da espécie de insetos galhadores variou significativamente entre as áreas de floresta de terra firme. No entanto, essas diferenças estruturais na composição das espécies podem ser devidas à dispersão desigual da variabilidade entre os habitats. Nossos dados sugerem que a heterogeneidade espacial, tal como o mosaico de status hídrico e nutricional do solo associado às condições topográficas, pode afetar plantas hospedeiras e insetos galhadores associados