The Complex Physics of Dusty Star-forming Galaxies at High Redshifts as Revealed by Herschel and Spitzer

We combine far-infrared photometry from Herschel (PEP/HerMES) with deep mid-infrared spectroscopy from Spitzer to investigate the nature and the mass assembly history of a sample of 31 luminous and ultraluminous infrared galaxies ((U)LIRGs) at z ~ 1 and 2 selected in GOODS-S with 24 μm fluxes between 0.2 and 0.5 mJy. We model the data with a self-consistent physical model (GRASIL) which includes a state-of-the-art treatment of dust extinction and reprocessing. We find that all of our galaxies appear to require massive populations of old (>1 Gyr) stars and, at the same time, to host a moderate ongoing activity of star formation (SFR ≤ 100 M_☉ yr^(–1)). The bulk of the stars appear to have been formed a few Gyr before the observation in essentially all cases. Only five galaxies of the sample require a recent starburst superimposed on a quiescent star formation history. We also find discrepancies between our results and those based on optical-only spectral energy distribution (SED) fitting for the same objects; by fitting their observed SEDs with our physical model we find higher extinctions (by ΔA_V ~ 0.81 and 1.14) and higher stellar masses (by Δlog(M_★) ~ 0.16 and 0.36 dex) for z ~ 1 and z ~ 2 (U)LIRGs, respectively. The stellar mass difference is larger for the most dust-obscured objects. We also find lower SFRs than those computed from L IR using the Kennicutt relation due to the significant contribution to the dust heating by intermediate-age stellar populations through "cirrus" emission (~73% and ~66% of the total L IR for z ~ 1 and z ~ 2 (U)LIRGs, respectively)

Combining Physical galaxy models with radio observations to constrain the SFRs of high-z dusty star forming galaxies

We complement our previous analysis of a sample of z~1-2 luminous and ultra-luminous infrared galaxies ((U)LIRGs), by adding deep VLA radio observations at 1.4 GHz to a large data-set from the far-UV to the sub-mm, including Spitzer and Herschel data. Given the relatively small number of (U)LIRGs in our sample with high S/N radio data, and to extend our study to a different family of galaxies, we also include 6 well sampled near IR-selected BzK galaxies at z~1.5. From our analysis based on the radiative transfer spectral synthesis code GRASIL, we find that, while the IR luminosity may be a biased tracer of the star formation rate (SFR) depending on the age of stars dominating the dust heating, the inclusion of the radio flux offers significantly tighter constraints on SFR. Our predicted SFRs are in good agreement with the estimates based on rest-frame radio luminosity and the Bell (2003) calibration. The extensive spectro-photometric coverage of our sample allows us to set important constraints on the SF history of individual objects. For essentially all galaxies we find evidence for a rather continuous SFR and a peak epoch of SF preceding that of the observation by a few Gyrs. This seems to correspond to a formation redshift of z~5-6. We finally show that our physical analysis may affect the interpretation of the SFR-M* diagram, by possibly shifting, with respect to previous works, the position of the most dust obscured objects to higher M* and lower SFRs.Comment: 26 pages, 15 figures, 3 tables, accepted for publication in MNRAS on Dec. 4th, 201

Genome-wide CNV investigation suggests a role for cadherin, Wnt, and p53 pathways in primary open-angle glaucoma

BACKGROUND: To investigate whether copy number variations (CNVs) are implicated in molecular mechanisms underlying primary open-angle glaucoma (POAG), we used genotype data of POAG individuals and healthy controls from two case-control studies, AGS (n = 278) and GLGS-UGLI (n = 1292). PennCNV, QuantiSNP, and cnvPartition programs were used to detect CNV. Stringent quality controls at both sample and marker levels were applied. The identified CNVs were intersected in CNV region (CNVR). After, we performed burden analysis, CNV-genome-wide association analysis, gene set overrepresentation and pathway analysis. In addition, in human eye tissues we assessed the expression of the genes lying within significant CNVRs. RESULTS: We reported a statistically significant greater burden of CNVs in POAG cases compared to controls (p-value = 0,007). In common between the two cohorts, CNV-association analysis identified statistically significant CNVRs associated with POAG that span 11 genes (APC, BRCA2, COL3A1, HLA-DRB1, HLA-DRB5, HLA-DRB6, MFSD8, NIPBL, SCN1A, SDHB, and ZDHHC11). Functional annotation and pathway analysis suggested the involvement of cadherin, Wnt signalling, and p53 pathways. CONCLUSIONS: Our data suggest that CNVs may have a role in the susceptibility of POAG and they can reveal more information on the mechanism behind this disease. Additional genetic and functional studies are warranted to ascertain the contribution of CNVs in POAG. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-021-07846-1

Mitochondrial Genome Study Identifies Association Between Primary Open-Angle Glaucoma and Variants in MT-CYB, MT-ND4 Genes and Haplogroups

Background and purpose: Primary open-angle glaucoma (POAG) is an optic neuropathy characterized by death of retinal ganglion cells and atrophy of the optic nerve head. The susceptibility of the optic nerve to damage has been shown to be mediated by mitochondrial dysfunction. In this study, we aimed to determine a possible association between mitochondrial SNPs or haplogroups and POAG. Methods: Mitochondrial DNA single nucleotide polymorphisms (mtSNPs) were genotyped using the Illumina Infinium Global Screening Array-24 (GSA) 700K array set. Genetic analyses were performed in a POAG case-control study involving the cohorts, Groningen Longitudinal Glaucoma Study-Lifelines Cohort Study and Amsterdam Glaucoma Study, including 721 patients and 1951 controls in total. We excluded samples not passing quality control for nuclear genotypes and samples with low call rate for mitochondrial variation. The mitochondrial variants were analyzed both as SNPs and haplogroups. These were determined with the bioinformatics software HaploGrep, and logistic regression analysis was used for the association, as well as for SNPs. Results: Meta-analysis of the results from both cohorts revealed a significant association between POAG and the allele A of rs2853496 [odds ratio (OR) = 0.64; p = 0.006] within the MT-ND4 gene, and for the T allele of rs35788393 (OR = 0.75; p = 0.041) located in the MT-CYB gene. In the mitochondrial haplogroup analysis, the most significant p-value was reached by haplogroup K (p = 1.2 × 10(−05)), which increases the risk of POAG with an OR of 5.8 (95% CI 2.7–13.1). Conclusion: We identified an association between POAG and polymorphisms in the mitochondrial genes MT-ND4 (rs2853496) and MT-CYB (rs35788393), and with haplogroup K. The present study provides further evidence that mitochondrial genome variations are implicated in POAG. Further genetic and functional studies are required to substantiate the association between mitochondrial gene polymorphisms and POAG and to define the pathophysiological mechanisms of mitochondrial dysfunction in glaucoma

Visualization of Directional Beaming of Weakly Localized Raman from a Random Network of Silicon Nanowires

Disordered optical media are an emerging class of materials that can strongly scatter light. These materials are useful to investigate light transport phenomena and for applications in imaging, sensing and energy storage. While coherent light can be generated using such materials, its directional emission is typically hampered by their strong scattering nature. Here, the authors directly image Rayleigh scattering, photoluminescence and weakly localized Raman light from a random network of silicon nanowires via real-space microscopy and Fourier imaging. Direct imaging enables us to gain insight on the light transport mechanisms in the random material, to visualize its weak localization length and to demonstrate out-of-plane beaming of the scattered coherent Raman light. The direct visualization of coherent light beaming in such random networks of silicon nanowires offers novel opportunities for fundamental studies of light propagation in disordered media. It also opens venues for the development of next generation optical devices based on disordered structures, such as sensors, light sources, and optical switches

Novel mutations in the PITX2 gene in Pakistani and Mexican families with Axenfeld-Rieger syndrome

Purpose Axenfeld-Rieger syndrome (ARS) is a rare autosomal dominant disorder that affects the anterior segment of the eye. The aim of this study was to examine the PITX2 gene to identify possible novel mutations in Pakistani and Mexican families affected by the ARS phenotype. Methods Three unrelated probands with a diagnosis of ARS were recruited for this study. Genomic DNA was isolated from the peripheral blood of the probands and their family members. Polymerase chain reaction and Sanger sequencing were used for the analysis of coding exons and the flanking intronic regions of the PITX2 gene. Bioinformatics tools and database (VarSome, Provean, and MutationTaster, SIFT, PolyPhen-2, and HOPE) were evaluated to explore missense variants. Results We identified novel heterozygous variations in the PITX2 gene that segregated with the ARS phenotype within the families. The variant NM_153426.2(PITX2):c.226G > T or p.(Ala76Ser) and the mutation NM_153426.2(PITX2):c.455G > A or p.(Cys152Tyr) were identified in two Pakistani pedigrees, and the mutation NM_153426.2(PITX2):c.242_265del or p.(Lys81_Gln88del), segregated in a Mexican family. Conclusion Our study extends the spectrum of PITX2 mutations in individuals with ARS, enabling an improved diagnosis of this rare but serious syndrome

Kidney tissue proteome profiles in short versus long duration of delayed graft function – a pilot study in donation after circulatory death donors

Introduction: Delayed graft function (DGF) is often defined as the need for dialysis treatment in the first week after a kidney transplantation. This definition, though readily applicable, is generic and unable to distinguish between “types” of DGF or time needed to recover function that may also significantly affect longer-term outcomes. We aimed to profile biological pathways in donation after circulatory death (DCD) kidney donors that correlate with DGF and different DGF durations. Methods: A total of N = 30 DCD kidney biopsies were selected from the UK Quality in Organ Donation (QUOD) biobank and stratified according to DGF duration (immediate function, IF n = 10; “short-DGF” (1–6 days), SDGF n = 10; “long-DGF” (7–22 days), LDGF n = 10). Samples were matched for donor and recipient demographics and analyzed by label-free quantitative (LFQ) proteomics, yielding identification of N = 3378 proteins. Results: Ingenuity pathway analysis (IPA) on differentially abundant proteins showed that SDGF kidneys presented upregulation of stress response pathways, whereas LDGF presented impaired response to stress, compared to IF. LDGF showed extensive metabolic deficits compared to IF and SDGF. Conclusion: DCD kidneys requiring dialysis only in the first week posttransplant present acute cellular injury at donation, alongside repair pathways upregulation. In contrast, DCD kidneys requiring prolonged dialysis beyond 7 days present minimal metabolic and antioxidant responses, suggesting that current DGF definitions might not be adequate in distinguishing different patterns of injury in donor kidneys contributing to DGF

Dust properties of Lyman break galaxies at z∼3z\sim3

We explore from a statistical point of view the far-infrared (far-IR) and sub-millimeter (sub-mm) properties of a large sample of LBGs (22,000) at z~3 in the COSMOS field. The large number of galaxies allows us to split it in several bins as a function of UV luminosity, UV slope, and stellar mass to better sample their variety. We perform stacking analysis in PACS (100 and 160 um), SPIRE (250, 350 and 500 um) and AzTEC (1.1 mm) images. Our stacking procedure corrects the biases induced by galaxy clustering and incompleteness of our input catalogue in dense regions. We obtain the full IR spectral energy distributions (SED) of subsamples of LBGs and derive the mean IR luminosity as a function of UV luminosity, UV slope, and stellar mass. The average IRX is roughly constant over the UV luminosity range, with a mean of 7.9 (1.8 mag). However, it is correlated with UV slope, and stellar mass. We investigate using a statistically-controlled stacking analysis as a function of (stellar mass, UV slope) the dispersion of the IRX-UVslope and IRX-M* plane. Our results enable us to study the average relation between star-formation rate (SFR) and stellar mass, and we show that our LBG sample lies on the main sequence of star formation at z~3.Comment: Accepted to A&A, 17 Pages, 14 Figures, 2 Table

Ultrathin silicon nanowires for optical and electrical nitrogen dioxide detection

The ever-stronger attention paid to enhancing safety in the workplace has led to novel sensor development and improvement. Despite the technological progress, nanostructured sensors are not being commercially transferred due to expensive and non-microelectronic compatible materials and processing approaches. In this paper, the realization of a cost-effective sensor based on ultrathin silicon nanowires (Si NWs) for the detection of nitrogen dioxide (NO2 ) is reported. A modification of the metal-assisted chemical etching method allows light-emitting silicon nanowires to be obtained through a fast, low-cost, and industrially compatible approach. NO2 is a well-known dangerous gas that, even with a small concentration of 3 ppm, represents a serious hazard for human health. We exploit the particular optical and electrical properties of these Si NWs to reveal low NO2 concentrations through their photoluminescence (PL) and resistance variations reaching 2 ppm of NO2 . Indeed, these Si NWs offer a fast response and reversibility with both electrical and optical transductions. Despite the macro contacts affecting the electrical transduction, the sensing performances are of high interest for further developments. These promising performances coupled with the scalable Si NW synthesis could unfold opportunities for smaller sized and better performing sensors reaching the market for environmental monitoring