Matching radiative transfer models and radiosonde data from the EPS/Metop Sodankylä campaign to IASI measurements

Radiances observed from IASI are compared to calculated ones. Calculated radiances are obtained using several radiative transfer models (OSS, LBLRTM v11.3 and v11.6) on best estimates of the atmospheric state vectors. The atmospheric state vectors are derived from cryogenic frost point hygrometer and humidity dry bias corrected RS92 measurements flown on sondes launched 1 h and 5 min before IASI overpass time. The temperature and humidity best estimate profiles are obtained by interpolating or extrapolating these measurements to IASI overpass time. The IASI observed and calculated radiances match to within one sigma IASI instrument noise in the spectral region where water vapour is a strong absorber (wavenumber, ν, in the range of 1500 ≤ ν ≤ 1570 and 1615 ≤ ν ≤ 1800 cm−1)

Matching radiative transfer models and radiosonde data from the EPS/Metop Sodankylä campaign to IASI measurements

Radiances observed from IASI are compared to calculated ones. Calculated radiances are obtained using several radiative transfer models (OSS, LBLRTM v11.3 and v11.6) on best estimates of the atmospheric state vectors. The atmospheric state vectors are derived from cryogenic frost point hygrometer and humidity dry bias corrected RS92 measurements flown on sondes launched 1 h and 5 min before IASI overpass time. The temperature and humidity best estimate profiles are obtained by interpolating or extrapolating these measurements to IASI overpass time. The IASI observed and calculated radiances match to within one sigma IASI instrument noise in the spectral region where water vapour is a strong absorber (wavenumber, ν, in the range of 1500 ≤ ν ≤ 1570 and 1615 ≤ ν ≤ 1800 cm<sup>−1</sup>)

Uncoupling endosomal CLC chloride/proton exchange causes severe neurodegeneration

CLC chloride/proton exchangers may support acidification of endolysosomes and raise their luminal Cl− concentration. Disruption of endosomal ClC‐3 causes severe neurodegeneration. To assess the importance of ClC‐3 Cl−/H+ exchange, we now generate Clcn3unc/unc mice in which ClC‐3 is converted into a Cl− channel. Unlike Clcn3−/− mice, Clcn3unc/unc mice appear normal owing to compensation by ClC‐4 with which ClC‐3 forms heteromers. ClC‐4 protein levels are strongly reduced in Clcn3−/−, but not in Clcn3unc/unc mice because ClC‐3unc binds and stabilizes ClC‐4 like wild‐type ClC‐3. Although mice lacking ClC‐4 appear healthy, its absence in Clcn3unc/unc/Clcn4−/− mice entails even stronger neurodegeneration than observed in Clcn3−/− mice. A fraction of ClC‐3 is found on synaptic vesicles, but miniature postsynaptic currents and synaptic vesicle acidification are not affected in Clcn3unc/unc or Clcn3−/− mice before neurodegeneration sets in. Both, Cl−/H+‐exchange activity and the stabilizing effect on ClC‐4, are central to the biological function of ClC‐3

POLDER observations of cloud bidirectional reflectances compared to a plane-parallel model using the International Satellite Cloud Climatology Project cloud phase functions

International audienceThis study investigates the validity of the plane-parallel cloud model and in addition the suitability of water droplet and ice polycrystal phase functions for stratocumulus and cirrus clouds, respectively. To do that, we take advantage of the multidirectional viewing capability of the Polarization and Directionality of the Earth's Reflectances (POLDER) instrument which allows us to characterize the anisotropy of the reflected radiation field. We focus on the analysis of airborne-POLDER data acquired over stratocumulus and cirrus clouds during two selected flights (on April 17 and April 18, 1994) of the European Cloud and Radiation Experiment (EUCREX'94) campaign. The bidirectional reflectances measured in the 0.86 μm channel are compared to plane-parallel cloud simulations computed with the microphysical models used by the International Satellite Cloud Climatology Project (ISCCP). Although clouds are not homogeneous plane-parallel layers, the extended cloud layers under study appear to act, on average, as a homogeneous plane-parallel layer. The standard water droplet model (with an effective radius of 10 μm) used in the ISCCP analysis seems to be suitable for stratocumulus clouds. The relative root-mean-square difference between the observed bidirectional reflectances and the model is only 2%. For cirrus clouds, the water droplet cloud model is definitely inadequate since the rms difference rises to 9%; when the ice polycrystal model chosen for the reanalysis of ISCCP data is used instead, the rms difference is reduced to 3%

Retrotransposon vectors for gene delivery in plants

<p>Abstract</p> <p>Background</p> <p>Retrotransposons are abundant components of plant genomes, and although some plant retrotransposons have been used as insertional mutagens, these mobile genetic elements have not been widely exploited for plant genome manipulation. In vertebrates and yeast, retrotransposons and retroviruses are routinely altered to carry additional genes that are copied into complementary (c)DNA through reverse transcription. Integration of cDNA results in gene delivery; recombination of cDNA with homologous chromosomal sequences can create targeted gene modifications. Plant retrotransposon-based vectors, therefore, may provide new opportunities for plant genome engineering.</p> <p>Results</p> <p>A retrotransposon vector system was developed for gene delivery in plants based on the Tnt1 element from <it>Nicotiana tabacum</it>. Mini-Tnt1 transfer vectors were constructed that lack coding sequences yet retain the 5' and 3' long terminal repeats (LTRs) and adjacent <it>cis </it>sequences required for reverse transcription. The internal coding region of Tnt1 was replaced with a neomycin phosphotransferase gene to monitor replication by reverse transcription. Two different mini-Tnt1 s were developed: one with the native 5' LTR and the other with a chimeric 5' LTR that had the first 233 bp replaced by the CaMV 35 S promoter. After transfer into tobacco protoplasts, both vectors undergo retrotransposition using GAG and POL proteins provided in <it>trans </it>by endogenous Tnt1 elements. The transposition frequencies of mini-Tnt1 vectors are comparable with native Tnt1 elements, and like the native elements, insertion sites are within or near coding sequences. In this paper, we provide evidence that template switching occurs during mini-Tnt1 reverse transcription, indicating that multiple copies of Tnt1 mRNA are packaged into virus-like particles.</p> <p>Conclusions</p> <p>Our data demonstrate that mini-Tnt1 vectors can replicate efficiently in tobacco cells using GAG and POL proteins provided in <it>trans </it>by native Tnt1 elements. This suggests that helper Tnt1 constructs can be developed to enable a Tnt1-based two-component vector system that could be used in other plant species. Such a vector system may prove useful for gene delivery or the production of cDNA that can serve as a donor molecule for gene modification through homologous recombination.</p

Radioactive Phosphorylation of Alcohols to Monitor Biocatalytic Diels-Alder Reactions

Nature has efficiently adopted phosphorylation for numerous biological key processes, spanning from cell signaling to energy storage and transmission. For the bioorganic chemist the number of possible ways to attach a single phosphate for radioactive labeling is surprisingly small. Here we describe a very simple and fast one-pot synthesis to phosphorylate an alcohol with phosphoric acid using trichloroacetonitrile as activating agent. Using this procedure, we efficiently attached the radioactive phosphorus isotope 32P to an anthracene diene, which is a substrate for the Diels-Alderase ribozyme—an RNA sequence that catalyzes the eponymous reaction. We used the 32P-substrate for the measurement of RNA-catalyzed reaction kinetics of several dye-labeled ribozyme variants for which precise optical activity determination (UV/vis, fluorescence) failed due to interference of the attached dyes. The reaction kinetics were analyzed by thin-layer chromatographic separation of the 32P-labeled reaction components and densitometric analysis of the substrate and product radioactivities, thereby allowing iterative optimization of the dye positions for future single-molecule studies. The phosphorylation strategy with trichloroacetonitrile may be applicable for labeling numerous other compounds that contain alcoholic hydroxyl groups

Existence of a lens-shaped cluster of surfaces self-shrinking by mean curvature

We rigorously show the existence of a rotationally and centrally symmetric "lens-shaped" cluster of three surfaces, meeting at a smooth common circle, forming equal angles of 120 degrees, self-shrinking under the motion by mean curvature.Comment: 22 pages, 2 figure

X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes

X-linked intellectual disability (XLID) is a clinically and genetically heterogeneous disorder. During the past two decades in excess of 100 X-chromosome ID genes have been identified. Yet, a large number of families mapping to the X-chromosome remained unresolved suggesting that more XLID genes or loci are yet to be identified. Here, we have investigated 405 unresolved families with XLID. We employed massively parallel sequencing of all X-chromosome exons in the index males. The majority of these males were previously tested negative for copy number variations and for mutations in a subset of known XLID genes by Sanger sequencing. In total, 745 X-chromosomal genes were screened. After stringent filtering, a total of 1297 non-recurrent exonic variants remained for prioritization. Co-segregation analysis of potential clinically relevant changes revealed that 80 families (20%) carried pathogenic variants in established XLID genes. In 19 families, we detected likely causative protein truncating and missense variants in 7 novel and validated XLID genes (CLCN4, CNKSR2, FRMPD4, KLHL15, LAS1L, RLIM and USP27X) and potentially deleterious variants in 2 novel candidate XLID genes (CDK16 and TAF1). We show that the CLCN4 and CNKSR2 variants impair protein functions as indicated by electrophysiological studies and altered differentiation of cultured primary neurons from Clcn4−/− mice or after mRNA knock-down. The newly identified and candidate XLID proteins belong to pathways and networks with established roles in cognitive function and intellectual disability in particular. We suggest that systematic sequencing of all X-chromosomal genes in a cohort of patients with genetic evidence for X-chromosome locus involvement may resolve up to 58% of Fragile X-negative cases